Clement Jonquet

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Mark MusenStanford Medicine Professor of Biomedical Informatics Research, Stanford UniversityVerified email at stanford.edu
Nigam ShahProfessor of Medicine, and Biomedical Data Science, Stanford UniversityVerified email at stanford.edu
Natasha NoyGoogleVerified email at google.com
Stefano A. CerriVicePres.R&D DKTS,Milano(I); Em.Prof. Informatics,Un.Montpellier(F); Dist.Fellow FBK,Trento(I)Verified email at didaelkts.it
Vincent EmonetData science developer, Swiss Institute of BioinformaticsVerified email at sib.swiss
Patricia L. WhetzelAssistant Professor, University of North CarolinaVerified email at tislab.org
Mathieu RocheCIRAD, TETISVerified email at cirad.fr
Anne TouletCIRAD (French Agricultural Research Centre for International Development)Verified email at cirad.fr
Maguelonne TeisseireINRAEVerified email at inrae.fr
Pierre LarmandeIRD (Institute of Research for Development) - DIADE UnitVerified email at ird.fr
Juan Antonio Lossio-VenturaResearch Scientist, National Institutes of HealthVerified email at nih.gov
Margaret-Anne StoreyProfessor of Computer Science, University of VictoriaVerified email at uvic.ca
Elizabeth ArnaudBioversity InternationalVerified email at cgiar.org
Adrien CouletInria ParisVerified email at inria.fr
Christopher G. ChuteBloomberg Distinguished Professor of Health Informatics, Johns HopkinsVerified email at jhu.edu
John GraybealTechnical Program Manager, Stanford UniversityVerified email at stanford.edu
Pascal DugenieALGO.SOLUTIONSVerified email at cines.fr
Valeria PesceData Scientist & Partnerships Facilitator at the Food and Agriculture Organization of the UNVerified email at fao.org
Andon TchechmedjievAssociate Professor at IMT Mines Alès / EuroMov DHMVerified email at mines-ales.fr
catherine rousseyMISTEA INRAE Occitanie, MontpellierVerified email at inrae.fr

Clement Jonquet

Senior Researcher – INRAE (MISTEA) & Associate Researcher – Univ. of Montpellier (LIRMM)

Verified email at lirmm.fr - Homepage

Ontologies Semantic Web Semantic annotation ontology repository knowledge graphs


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BioPortal: ontologies and integrated data resources at the click of a mouse NF Noy, NH Shah, PL Whetzel, B Dai, M Dorf, N Griffith, C Jonquet, ... Nucleic acids research 37 (suppl_2), W170-W173, 2009	1159	2009
The open biomedical annotator C Jonquet, NH Shah, MA Musen Summit on translational bioinformatics 2009, 56, 2009	366	2009
AgroPortal: A vocabulary and ontology repository for agronomy C Jonquet, A Toulet, E Arnaud, S Aubin, ED Yeumo, V Emonet, ... Computers and Electronics in Agriculture 144, 126-143, 2018	212	2018
Comparison of concept recognizers for building the Open Biomedical Annotator NH Shah, N Bhatia, C Jonquet, D Rubin, AP Chiang, MA Musen BMC bioinformatics 10, 1-9, 2009	195	2009
Ontology-driven indexing of public datasets for translational bioinformatics NH Shah, C Jonquet, AP Chiang, AJ Butte, R Chen, MA Musen BMC bioinformatics 10, 1-10, 2009	153	2009
NCBO annotator: semantic annotation of biomedical data C Jonquet, NH Shah, CH Youn, MA Musen, C Callendar, MA Storey ISWC 2009-8th International Semantic Web Conference, Poster and Demo Session, 2009	131	2009
NCBO Resource Index: Ontology-based search and mining of biomedical resources C Jonquet, P LePendu, S Falconer, A Coulet, NF Noy, MA Musen, ... Journal of Web Semantics 9 (3), 316-324, 2011	129	2011
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation M Martínez-Romero, C Jonquet, MJ O’connor, J Graybeal, A Pazos, ... Journal of biomedical semantics 8, 1-22, 2017	117	2017
Biomedical term extraction: overview and a new methodology JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire Information Retrieval Journal 19, 59-99, 2016	104	2016
Building a biomedical ontology recommender web service C Jonquet, MA Musen, NH Shah Journal of biomedical semantics 1, 1-18, 2010	103	2010
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture L Harper, J Campbell, EKS Cannon, S Jung, M Poelchau, R Walls, ... Database 2018, bay088, 2018	83	2018
What four million mappings can tell you about two hundred ontologies A Ghazvinian, NF Noy, C Jonquet, N Shah, MA Musen The Semantic Web-ISWC 2009: 8th International Semantic Web Conference, ISWC …, 2009	74	2009
Results of the ontology alignment evaluation initiative 2020 MAN Pour, A Algergawy, R Amini, D Faria, I Fundulaki, I Harrow, ... 15th International Workshop on Ontology Matching (OM 2020) 2788, 92-138, 2020	70	2020
BioPortal: ontologies and data resources with the click of a mouse M Musen, N Shah, N Noy, B Dai, M Dorf, N Griffith, JD Buntrock, ... AMIA Annu Symp Proc 6, 1223-1224, 2008	61	2008
A system for ontology-based annotation of biomedical data C Jonquet, MA Musen, N Shah Data Integration in the Life Sciences: 5th International Workshop, DILS 2008 …, 2008	60	2008
Yet another ranking function for automatic multiword term extraction JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire International conference on natural language processing, 52-64, 2014	52	2014
Combining c-value and keyword extraction methods for biomedical terms extraction JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire LBM: languages in biology and medicine, 2013	52	2013
FAIRness literacy: the Achilles’ heel of applying FAIR principles R David, L Mabile, A Specht, S Stryeck, M Thomsen, M Yahia, C Jonquet, ... CODATA Data Science Journal 19 (32), 1-11, 2020	48	2020
Biotex: A system for biomedical terminology extraction, ranking, and validation JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire 13th International Semantic Web Conference (ISWC 2014), poster & demo …, 2014	47	2014
BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse PL Whetzel, NH Shah, NF Noy, B Dai, M Dorf, N Griffith, C Jonquet, ... 1st International Conference on Biomedical Ontology (ICBO 2009), Poster …, 2009	44	2009

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