Giovanni Bussotti
Giovanni Bussotti
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An Integrated Encyclopedia of DNA Elements in the Human Genome
J Khatun
Nature, 2012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
Long noncoding RNAs with enhancer-like function in human cells
UA ěrom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ...
Cell 143 (1), 46-58, 2010
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis
S Ounzain, R Micheletti, C Arnan, I Plaisance, D Cecchi, B Schroen, ...
Journal of molecular and cellular cardiology 89, 98-112, 2015
Multiple sequence alignment modeling: methods and applications
M Chatzou, C Magis, JM Chang, C Kemena, G Bussotti, I Erb, ...
Briefings in bioinformatics 17 (6), 1009-1023, 2016
Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing
MB Clark, TR Mercer, G Bussotti, T Leonardi, KR Haynes, J Crawford, ...
Nature methods 12 (4), 339-342, 2015
Modulation of Aneuploidy in Leishmania donovani during Adaptation to Different In Vitro and In Vivo Environments and Its Impact on Gene Expression
F Dumetz, H Imamura, M Sanders, V Seblova, J Myskova, P Pescher, ...
MBio 8 (3), e00599-17, 2017
Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures
JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Nature protocols 6 (11), 1669-1682, 2011
Exploring the gonad transcriptome of two extreme male pigs with RNA-seq
A Esteve-Codina, R Kofler, N Palmieri, G Bussotti, C Notredame, ...
BMC genomics 12 (1), 1-14, 2011
Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani
P Prieto Barja, P Pescher, G Bussotti, F Dumetz, H Imamura, D Kedra, ...
Nature ecology & evolution 1 (12), 1961-1969, 2017
Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression
DD Pervouchine, S Djebali, A Breschi, CA Davis, PP Barja, A Dobin, ...
Nature communications 6 (1), 5903, 2015
Leishmania Genome Dynamics during Environmental Adaptation Reveal Strain-Specific Differences in Gene Copy Number Variation, Karyotype Instability, andá…
G Bussotti, E Gouzelou, M C˘rtes BoitÚ, I Kherachi, Z Harrat, N Eddaikra, ...
MBio 9 (6), e01399-18, 2018
T-Coffee: Tree-based consistency objective function for alignment evaluation
C Magis, JF Taly, G Bussotti, JM Chang, P Di Tommaso, I Erb, ...
Multiple Sequence Alignment Methods, 117-129, 2014
Intron retention-dependent gene regulation in Cryptococcus neoformans
S Gonzalez-Hilarion, D Paulet, KT Lee, CC Hon, P Lechat, E Mogensen, ...
Scientific reports 6 (1), 32252, 2016
Targeting macrophage histone H3 modification as a leishmania strategy to dampen the NF-κB/NLRP3-mediated inflammatory response
H Lecoeur, E Prina, T Rosazza, K Kokou, P N’Diaye, N Aulner, H Varet, ...
Cell Reports 30 (6), 1870-1882. e4, 2020
Non-coding RNA expression, function, and variation during Drosophila embryogenesis
IE Schor, G Bussotti, M Maleš, M Forneris, RR Viales, AJ Enright, ...
Current Biology 28 (22), 3547-3561. e9, 2018
Transposon‐driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution
MP Davis, C Carrieri, HK Saini, S van Dongen, T Leonardi, G Bussotti, ...
EMBO reports 18 (7), 1231-1247, 2017
Detecting and comparing non-coding RNAs in the high-throughput era
G Bussotti, C Notredame, AJ Enright
International journal of molecular sciences 14 (8), 15423-15458, 2013
BlastR—fast and accurate database searches for non-coding RNAs
G Bussotti, E Raineri, I Erb, M Zytnicki, A Wilm, E Beaudoing, P Bucher, ...
Nucleic acids research 39 (16), 6886-6895, 2011
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Articles 1–20