| Development of a Novel mcr-6 to mcr-9 Multiplex PCR and Assessment of mcr-1 to mcr-9 Occurrence in Colistin-Resistant Salmonella enterica Isolates From … M Borowiak, B Baumann, J Fischer, K Thomas, C Deneke, JA Hammerl, ... Frontiers in microbiology 11, 80, 2020 | 143 | 2020 |
| Typing methods based on whole genome sequencing data L Uelze, J Grützke, M Borowiak, JA Hammerl, K Juraschek, C Deneke, ... One Health Outlook 2, 1-19, 2020 | 130 | 2020 |
| PaPrBaG: A machine learning approach for the detection of novel pathogens from NGS data C Deneke, R Rentzsch, BY Renard Scientific reports 7 (1), 39194, 2017 | 68 | 2017 |
| Fishing in the soup–pathogen detection in food safety using metabarcoding and metagenomic sequencing J Grützke, B Malorny, JA Hammerl, A Busch, SH Tausch, H Tomaso, ... Frontiers in microbiology 10, 463591, 2019 | 57 | 2019 |
| Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA C Deneke, R Lipowsky, A Valleriani PloS one 8 (2), e55442, 2013 | 53 | 2013 |
| Species-specific quality control, assembly and contamination detection in microbial isolate sequences with AQUAMIS C Deneke, H Brendebach, L Uelze, M Borowiak, B Malorny, SH Tausch Genes 12 (5), 644, 2021 | 51 | 2021 |
| Effect of ribosome shielding on mRNA stability C Deneke, R Lipowsky, A Valleriani Physical biology 10 (4), 046008, 2013 | 49 | 2013 |
| Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data L Uelze, M Borowiak, C Deneke, I Szabó, J Fischer, SH Tausch, ... Applied and Environmental Microbiology 86 (5), e02265-19, 2020 | 42 | 2020 |
| Characterization of mcr-5-Harboring Salmonella enterica subsp. enterica Serovar Typhimurium Isolates from Animal and Food Origin in Germany M Borowiak, JA Hammerl, C Deneke, J Fischer, I Szabo, B Malorny Antimicrobial agents and chemotherapy 63 (6), 10.1128/aac. 00063-19, 2019 | 42 | 2019 |
| Muon-pair creation by two X-ray laser photons in the field of an atomic nucleus C Müller, C Deneke, CH Keitel Physical review letters 101 (6), 060402, 2008 | 40 | 2008 |
| Outcome of different sequencing and assembly approaches on the detection of plasmids and localization of antimicrobial resistance genes in commensal Escherichia coli K Juraschek, M Borowiak, SH Tausch, B Malorny, A Käsbohrer, S Otani, ... Microorganisms 9 (3), 598, 2021 | 39 | 2021 |
| Whole genome sequencing reveals extended natural transformation in Campylobacter impacting diagnostics and the pathogens adaptive potential JC Golz, L Epping, MT Knüver, M Borowiak, F Hartkopf, C Deneke, ... Scientific reports 10 (1), 3686, 2020 | 29 | 2020 |
| Decentralized investigation of bacterial outbreaks based on hashed cgMLST C Deneke, L Uelze, H Brendebach, SH Tausch, B Malorny Frontiers in Microbiology 12, 649517, 2021 | 26 | 2021 |
| Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany L Uelze, N Becker, M Borowiak, U Busch, A Dangel, C Deneke, J Fischer, ... Frontiers in microbiology 12, 626941, 2021 | 22 | 2021 |
| Bound-free e+ e− pair creation with a linearly polarized laser field and a nuclear field C Deneke, C Müller Physical Review A 78 (3), 033431, 2008 | 22 | 2008 |
| Bound-free e+ e− pair creation with a linearly polarized laser field and a nuclear field C Deneke, C Müller Physical Review A 78 (3), 033431, 2008 | 22 | 2008 |
| Translatability of WGS typing results can simplify data exchange for surveillance and control of Listeria monocytogenes S Lüth, C Deneke, S Kleta, S Al Dahouk Microbial Genomics 7 (1), 000491, 2021 | 18 | 2021 |
| Transient phenomena in gene expression after induction of transcription C Deneke, S Rudorf, A Valleriani PLoS One 7 (4), e35044, 2012 | 17 | 2012 |
| German-wide interlaboratory study compares consistency, accuracy and reproducibility of whole-genome short read sequencing L Uelze, M Borowiak, M Bönn, E Brinks, C Deneke, T Hankeln, S Kleta, ... Frontiers in Microbiology 11, 573972, 2020 | 15 | 2020 |
| Predicting bacterial virulence factors–evaluation of machine learning and negative data strategies R Rentzsch, C Deneke, A Nitsche, BY Renard Briefings in Bioinformatics 21 (5), 1596-1608, 2020 | 15 | 2020 |
Simon H. TauschGerman Federal Institute for Risk AssessmentVerified email at bfr.bund.de
