Haruka Ozaki
Haruka Ozaki
Bioinformatics Laboratory, Faculty of Medicine, University of Tsukuba
Bekræftet mail på md.tsukuba.ac.jp - Startside
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Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs
T Hayashi, H Ozaki, Y Sasagawa, M Umeda, H Danno, I Nikaido
Nature communications 9 (1), 1-16, 2018
1552018
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes
H Yoshitane, H Ozaki, H Terajima, NH Du, Y Suzuki, T Fujimori, N Kosaka, ...
Molecular and cellular biology 34 (10), 1776-1787, 2014
872014
ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm
H Terajima, H Yoshitane, H Ozaki, Y Suzuki, S Shimba, S Kuroda, ...
Nature genetics 49 (1), 146-151, 2017
662017
CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data
T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu
Genome biology 15 (1), 1-15, 2014
612014
Somatic primary piRNA biogenesis driven by cis-acting RNA elements and trans-acting Yb
H Ishizu, YW Iwasaki, S Hirakata, H Ozaki, W Iwasaki, H Siomi, MC Siomi
Cell reports 12 (3), 429-440, 2015
552015
Discovery of osmotic sensitive transcription factors in fish intestine via a transcriptomic approach
MKS Wong, H Ozaki, Y Suzuki, W Iwasaki, Y Takei
BMC genomics 15 (1), 1-13, 2014
242014
Parallel selection on gene copy number variations through evolution of three-spined stickleback genomes
S Hirase, H Ozaki, W Iwasaki
BMC genomics 15 (1), 1-10, 2014
242014
Functional D-box sequences reset the circadian clock and drive mRNA rhythms
H Yoshitane, Y Asano, A Sagami, S Sakai, Y Suzuki, H Okamura, ...
Communications biology 2 (1), 1-10, 2019
212019
Molecular mechanisms underlying active desalination and low water permeability in the esophagus of eels acclimated to seawater
Y Takei, MKS Wong, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, M Kusakabe
American Journal of Physiology-Regulatory, Integrative and Comparative …, 2017
192017
Flexible selection of diversified Na+/K+-ATPase α-subunit isoforms for osmoregulation in teleosts
MKS Wong, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, Y Takei
Zoological letters 2 (1), 1-22, 2016
192016
Possible cross-feeding pathway of facultative methylotroph Methyloceanibacter caenitepidi Gela4 on methanotroph Methylocaldum marinum S8
M Takeuchi, H Ozaki, S Hiraoka, Y Kamagata, S Sakata, H Yoshioka, ...
PloS one 14 (3), e0213535, 2019
122019
Stability of RNA sequences derived from the coronavirus genome in human cells
H Wakida, K Kawata, Y Yamaji, E Hattori, T Tsuchiya, Y Wada, H Ozaki, ...
Biochemical and biophysical research communications 527 (4), 993-999, 2020
112020
A sodium binding system alleviates acute salt stress during seawater acclimation in eels
MKS Wong, T Tsukada, N Ogawa, S Pipil, H Ozaki, Y Suzuki, W Iwasaki, ...
Zoological letters 3 (1), 1-20, 2017
92017
An NMF-based approach to discover overlooked differentially expressed gene regions from single-cell RNA-seq data
H Matsumoto, T Hayashi, H Ozaki, K Tsuyuzaki, M Umeda, T Iida, ...
NAR Genomics and Bioinformatics 2 (1), lqz020, 2019
62019
Transomics analysis reveals allosteric and gene regulation axes for altered hepatic glucose-responsive metabolism in obesity
T Kokaji, A Hatano, Y Ito, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ...
Science signaling 13 (660), 2020
52020
Millefy: visualizing cell-to-cell heterogeneity in read coverage of single-cell RNA sequencing datasets
H Ozaki, T Hayashi, U Mana, I Nikaido
BMC Genomics 21, 177, 2020
42020
MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-seq data
H Ozaki, W Iwasaki
Computational biology and chemistry 63, 62-72, 2016
42016
Trans-omic analysis reveals obesity-associated dysregulation of inter-organ metabolic cycles between the liver and skeletal muscle
R Egami, T Kokaji, A Hatano, K Yugi, M Eto, K Morita, S Ohno, M Fujii, ...
iScience 24 (3), 102217, 2021
12021
Cell-to-cell interaction analysis of prognostic ligand-receptor pairs in human pancreatic ductal adenocarcinoma
SR Suzuki, A Kuno, H Ozaki
Biochemistry and biophysics reports 28, 101126, 2021
2021
Integrated analysis of glycan and RNA in single cells
F Minoshima, H Ozaki, H Odaka, H Tateno
Iscience 24 (8), 102882, 2021
2021
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Artikler 1–20