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Katherine Siddle
Katherine Siddle
Postdoctoral fellow, Harvard University
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
Outbreak of SARS-CoV-2 infections, including COVID-19 vaccine breakthrough infections, associated with large public gatherings—Barnstable County, Massachusetts, July 2021
CM Brown
MMWR. Morbidity and mortality weekly report 70, 2021
6292021
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets
TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ...
Nature 595 (7865), 107-113, 2021
5932021
Benchmarking metagenomics tools for taxonomic classification
HY Simon, KJ Siddle, DJ Park, PC Sabeti
Cell 178 (4), 779-794, 2019
4032019
Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events
JE Lemieux, KJ Siddle, BM Shaw, C Loreth, SF Schaffner, ...
Science 371 (6529), eabe3261, 2021
2542021
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ...
Science 374 (6566), 423-431, 2021
1842021
Genomic analysis of Lassa virus during an increase in cases in Nigeria in 2018
KJ Siddle, P Eromon, KG Barnes, S Mehta, JU Oguzie, I Odia, ...
New England Journal of Medicine 379 (18), 1745-1753, 2018
1722018
Comparative transmissibility of SARS-CoV-2 variants delta and alpha in New England, USA
R Earnest, R Uddin, N Matluk, N Renzette, SE Turbett, KJ Siddle, C Loreth, ...
Cell Reports Medicine 3 (4), 2022
1552022
Multiplexed CRISPR-based microfluidic platform for clinical testing of respiratory viruses and identification of SARS-CoV-2 variants
NL Welch, M Zhu, C Hua, J Weller, ME Mirhashemi, TG Nguyen, ...
Nature Medicine 28 (5), 1083-1094, 2022
1382022
Deployable CRISPR-Cas13a diagnostic tools to detect and report Ebola and Lassa virus cases in real-time
KG Barnes, AE Lachenauer, A Nitido, S Siddiqui, R Gross, B Beitzel, ...
Nature communications 11 (1), 4131, 2020
1272020
The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists
E Patin, KJ Siddle, G Laval, H Quach, C Harmant, N Becker, A Froment, ...
Nature communications 5 (1), 3163, 2014
1222014
Capturing sequence diversity in metagenomes with comprehensive and scalable probe design
HC Metsky, KJ Siddle, A Gladden-Young, J Qu, DK Yang, P Brehio, ...
Nature biotechnology 37 (2), 160-168, 2019
1112019
Widespread shortening of 3’untranslated regions and increased exon inclusion are evolutionarily conserved features of innate immune responses to infection
AA Pai, G Baharian, A Pagé Sabourin, JF Brinkworth, Y Nédélec, ...
PLoS genetics 12 (9), e1006338, 2016
972016
The epigenomic landscape of African rainforest hunter-gatherers and farmers
M Fagny, E Patin, JL MacIsaac, M Rotival, T Flutre, MJ Jones, KJ Siddle, ...
Nature communications 6 (1), 10047, 2015
892015
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ...
Science 378 (6615), eabq5358, 2022
832022
Bacterial Infection Drives the Expression Dynamics of microRNAs and Their isomiRs
KJ Siddle, L Tailleux, M Deschamps, YHE Loh, C Deluen, B Gicquel, ...
PLoS genetics 11 (3), e1005064-e1005064, 2015
812015
A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection
KJ Siddle, M Deschamps, L Tailleux, Y Nédélec, J Pothlichet, ...
Genome research 24 (5), 850-859, 2014
712014
Genomic evidence for local adaptation of hunter-gatherers to the African rainforest
M Lopez, J Choin, M Sikora, K Siddle, C Harmant, HA Costa, M Silvert, ...
Current Biology 29 (17), 2926-2935. e4, 2019
552019
The Red Queen's long race: human adaptation to pathogen pressure
KJ Siddle, L Quintana-Murci
Current Opinion in Genetics & Development 29, 31-38, 2014
522014
Field validation of recombinant antigen immunoassays for diagnosis of Lassa fever
ML Boisen, JN Hartnett, JG Shaffer, A Goba, M Momoh, JD Sandi, ...
Scientific reports 8 (1), 5939, 2018
512018
Negative selection by spiral inertial microfluidics improves viral recovery and sequencing from blood
K Choi, H Ryu, KJ Siddle, A Piantadosi, L Freimark, DJ Park, P Sabeti, ...
Analytical chemistry 90 (7), 4657-4662, 2018
452018
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