| Robust design of microbial strains J Costanza, G Carapezza, C Angione, P Lió, G Nicosia Bioinformatics 28 (23), 3097-3104, 2012 | 67 | 2012 |
| Pareto optimal design for synthetic biology A Patane, A Santoro, J Costanza, G Carapezza, G Nicosia IEEE transactions on biomedical circuits and systems 9 (4), 555-571, 2015 | 26 | 2015 |
| A benchmarking of pipelines for detecting ncRNAs from RNA-Seq data S Di Bella, A La Ferlita, G Carapezza, S Alaimo, A Isacchi, A Ferro, ... Briefings in Bioinformatics 21 (6), 1987-1998, 2020 | 24 | 2020 |
| Multi-objective optimization of genome-scale metabolic models: the case of ethanol production A Patané, G Jansen, P Conca, G Carapezza, J Costanza, G Nicosia Annals of Operations Research 276, 211-227, 2019 | 23 | 2019 |
| Pareto optimality in organelle energy metabolism analysis C Angione, G Carapezza, J Costanza, P Lió, G Nicosia IEEE/ACM transactions on computational biology and bioinformatics 10 (4 …, 2013 | 18 | 2013 |
| Establishment and genomic characterization of the new chordoma cell line Chor-IN-1 R Bosotti, P Magnaghi, S Di Bella, L Cozzi, C Cusi, F Bozzi, N Beltrami, ... Scientific reports 7 (1), 9226, 2017 | 16 | 2017 |
| Multi-target analysis and design of mitochondrial metabolism C Angione, J Costanza, G Carapezza, P Lió, G Nicosia PloS one 10 (9), e0133825, 2015 | 16 | 2015 |
| Efficient behavior of photosynthetic organelles via Pareto optimality, identifiability, and sensitivity analysis G Carapezza, R Umeton, J Costanza, C Angione, G Stracquadanio, ... ACS synthetic biology 2 (5), 274-288, 2013 | 13 | 2013 |
| Multi-objective optimisation, sensitivity and robustness analysis in FBA modelling J Costanza, G Carapezza, C Angione, P Liò, G Nicosia Computational Methods in Systems Biology: 10th International Conference …, 2012 | 13 | 2012 |
| Computing with metabolic machines C Angione, G Carapezza, J Costanza, P Lió, G Nicosia Turing-100. Volume 10 of EPiC Series 10, 1-15, 2012 | 11 | 2012 |
| Multi-objective optimization and analysis for the design space exploration of analog circuits and solar cells A Patanè, A Santoro, P Conca, G Carapezza, A La Magna, V Romano, ... Engineering Applications of Artificial Intelligence 62, 373-383, 2017 | 10 | 2017 |
| A design automation framework for computational bioenergetics in biological networks C Angione, J Costanza, G Carapezza, P Lió, G Nicosia Molecular BioSystems 9 (10), 2554-2564, 2013 | 9 | 2013 |
| Analysis and design of molecular machines C Angione, J Costanza, G Carapezza, P Lió, G Nicosia Theoretical Computer Science 599, 102-117, 2015 | 5 | 2015 |
| Pareto epsilon-dominance and identifiable solutions for BioCAD modeling C Angione, J Costanza, G Carapezza, P Lió, G Nicosia Proceedings of the 50th Annual Design Automation Conference, 1-9, 2013 | 4 | 2013 |
| NF1 gene inactivation acts as a tumor driver in RET/RAS-negative medullary thyroid carcinomas R Ciampi, T Ramone, C Romei, R Casalini, A Matrone, A Prete, ... European Journal of Endocrinology 188 (5), 430-437, 2023 | 3 | 2023 |
| KAOS: a new automated computational method for the identification of overexpressed genes A Nuzzo, G Carapezza, S Di Bella, A Pulvirenti, A Isacchi, R Bosotti BMC bioinformatics 17, 5-14, 2016 | 3 | 2016 |
| Design and strain selection criteria for bacterial communication networks C Angione, G Carapezza, J Costanza, P Lió, G Nicosia Nano Communication Networks 4 (4), 155-163, 2013 | 3 | 2013 |
| Rational design of organelle compartments in cells C Angione, G Carapezza, J Costanza, P Lió, G Nicosia EMBnet. journal 18 (B), 20-22, 2012 | 3 | 2012 |
| Mining potentially actionable kinase gene fusions in cancer cell lines with the KuNG FU database A Somaschini, S Di Bella, C Cusi, L Raddrizzani, A Leone, G Carapezza, ... Scientific Data 7 (1), 420, 2020 | 2 | 2020 |
| Metabolic circuit design automation by multi-objective BioCAD A Patané, P Conca, G Carapezza, A Santoro, J Costanza, G Nicosia Machine Learning, Optimization, and Big Data: Second International Workshop …, 2016 | 2 | 2016 |
