| Machine learning for metagenomics: methods and tools H Soueidan, M Nikolski arXiv preprint arXiv:1510.06621, 2015 | 59 | 2015 |
| Comparative analysis of human and mouse transcriptomes of Th17 cell priming S Tuomela, S Rautio, H Ahlfors, V Öling, V Salo, U Ullah, Z Chen, ... Oncotarget 7 (12), 13416, 2016 | 47 | 2016 |
| Finishing bacterial genome assemblies with Mix H Soueidan, F Maurier, A Groppi, P Sirand-Pugnet, F Tardy, C Citti, ... BMC bioinformatics 14 (15), 1-11, 2013 | 41 | 2013 |
| Sensitizing Triple-Negative Breast Cancer to PI3K Inhibition by Cotargeting IGF1RSensitizing TNBC to PI3K Inhibition by Cotargeting IGF1R K de Lint, JB Poell, H Soueidan, K Jastrzebski, J Vidal Rodriguez, ... Molecular cancer therapeutics 15 (7), 1545-1556, 2016 | 34 | 2016 |
| Clinical and genomic analysis of a randomised phase II study evaluating anastrozole and fulvestrant in postmenopausal patients treated for large operable or locally advanced … N Quenel-Tueux, M Debled, J Rudewicz, G MacGrogan, M Pulido, ... British journal of cancer 113 (4), 585-594, 2015 | 30 | 2015 |
| Flux analysis of the Trypanosoma brucei glycolysis based on a multiobjective-criteria bioinformatic approach A Ghozlane, F Bringaud, H Soueidan, I Dutour, F Jourdan, P Thébault Advances in bioinformatics 2012, 2012 | 25 | 2012 |
| Finding and identifying the viral needle in the metagenomic haystack: trends and challenges H Soueidan, LA Schmitt, T Candresse, M Nikolski Frontiers in microbiology 5, 739, 2015 | 20 | 2015 |
| BioRica: A multi model description and simulation system H Soueidan, DJ Sherman, M Nikolski F0SBE, 279-287, 2007 | 15 | 2007 |
| Identification of conserved gene clusters in multiple genomes based on synteny and homology A Sarkar, H Soueidan, M Nikolski BMC bioinformatics 12, 1-10, 2011 | 12 | 2011 |
| Interrogating RNA and protein spatial subcellular distribution in smFISH data with DypFISH AF Savulescu, R Brackin, E Bouilhol, B Dartigues, JH Warrell, ... Cell Reports Methods 1 (5), 100068, 2021 | 10 | 2021 |
| xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model M El-Kebir, H Soueidan, T Hume, D Beisser, M Dittrich, T Müller, G Blin, ... Bioinformatics 31 (19), 3147-3155, 2015 | 10 | 2015 |
| MICADo–looking for mutations in targeted PacBio cancer data: an alignment-free method J Rudewicz, H Soueidan, R Uricaru, H Bonnefoi, R Iggo, J Bergh, ... Frontiers in genetics 7, 214, 2016 | 6 | 2016 |
| Machine learning for metagenomics: Methods and tools. arXiv 2015 H Soueidan, M Nikolski arXiv preprint arXiv:1510.06621, 2015 | 5 | 2015 |
| Timely deposition of macromolecular structures is necessary for peer review RP Joosten, H Soueidan, LFA Wessels, A Perrakis Acta Crystallographica Section D: Biological Crystallography 69 (12), 2293-2295, 2013 | 4 | 2013 |
| Discrete event modeling and analysis for systems biology models H Soueidan Université Sciences et Technologies-Bordeaux I, 2009 | 4 | 2009 |
| Exploratory simulation of cell ageing using hierarchical models M Cvijovic, H Soueidan, DJ Sherman, E Klipp, M Nikolski Genome Informatics 21, 114-125, 2008 | 4 | 2008 |
| Machine learning for metagenomics: methods and tools. 2015 H Soueidan, M Nikolski | 4 | |
| Qualitative transition systems for the abstraction and comparison of transient behavior in parametrized dynamic models H Soueidan, G Sutre, M Nikolski Computational Methods in Systems Biology: 7th International Conference, CMSB …, 2009 | 2 | 2009 |
| Approximation Hardness of the Cross-Species Conserved Active Modules Detection Problem T Hume, H Soueidan, M Nikolski, G Blin SOFSEM 2015: Theory and Practice of Computer Science: 41st International …, 2015 | 1 | 2015 |
| Efficient mapping of short peptides on whole proteome database for biomarker discovery T Hume, H Soueidan, FWJ Tai, A Vekris, K Petry, M Nikolski JOBIM 2013, 2013 | 1 | 2013 |
