Kyle Ellrott
Title
Cited by
Cited by
Year
Comprehensive molecular portraits of human breast tumours
Cancer Genome Atlas Network
Nature 490 (7418), 61, 2012
75632012
Comprehensive molecular characterization of human colon and rectal cancer
Cancer Genome Atlas Network
Nature 487 (7407), 330, 2012
49832012
The cancer genome atlas pan-cancer analysis project
JN Weinstein, EA Collisson, GB Mills, KRM Shaw, BA Ozenberger, ...
Nature genetics 45 (10), 1113-1120, 2013
39432013
The somatic genomic landscape of glioblastoma
CW Brennan, RGW Verhaak, A McKenna, B Campos, H Noushmehr, ...
Cell 155 (2), 462-477, 2013
31642013
Comprehensive genomic characterization of squamous cell lung cancers
Cancer Genome Atlas Research Network
Nature 489 (7417), 519, 2012
26372012
Comprehensive molecular characterization of clear cell renal cell carcinoma
Cancer Genome Atlas Research Network
Nature 499 (7456), 43, 2013
18682013
Scalable open science approach for mutation calling of tumor exomes using multiple genomic pipelines
K Ellrott, MH Bailey, G Saksena, KR Covington, C Kandoth, C Stewart, ...
Cell systems 6 (3), 271-281. e7, 2018
2542018
Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection
AD Ewing, KE Houlahan, Y Hu, K Ellrott, C Caloian, TN Yamaguchi, ...
Nature methods 12 (7), 623-630, 2015
2202015
The UCSC cancer genomics browser: update 2013
M Goldman, B Craft, T Swatloski, K Ellrott, M Cline, M Diekhans, S Ma, ...
Nucleic acids research 41 (D1), D949-D954, 2013
1742013
Identifying transcription factor binding sites through Markov chain optimization
K Ellrott, C Yang, FM Sladek, T Jiang
Bioinformatics 18 (suppl_2), S100-S109, 2002
1352002
PROSPECT II: protein structure prediction program for genome‐scale applications
D Kim, D Xu, J Guo, K Ellrott, Y Xu
Protein engineering 16 (9), 641-650, 2003
1342003
Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas
L Omberg, K Ellrott, Y Yuan, C Kandoth, C Wong, MR Kellen, SH Friend, ...
Nature genetics 45 (10), 1121-1126, 2013
1012013
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily
A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ...
Cell systems 7 (4), 422-437. e7, 2018
602018
Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine …
Q Xu, P Abdubek, T Astakhova, HL Axelrod, C Bakolitsa, X Cai, D Carlton, ...
Acta Crystallographica Section F: Structural Biology and Crystallization …, 2010
602010
Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families
K Ellrott, L Jaroszewski, W Li, JC Wooley, A Godzik
PLoS Comput Biol 6 (6), e1000798, 2010
592010
TumorMap: exploring the molecular similarities of cancer samples in an interactive portal
Y Newton, AM Novak, T Swatloski, DC McColl, S Chopra, K Graim, ...
Cancer research 77 (21), e111-e114, 2017
442017
Global optimization of somatic variant identification in cancer genomes with a global community challenge
PC Boutros, AD Ewing, K Ellrott, TC Norman, KK Dang, Y Hu, MR Kellen, ...
Nature genetics 46 (4), 318-319, 2014
392014
A computational pipeline for protein structure prediction and analysis at genome scale
M Shah, S Passovets, D Kim, K Ellrott, L Wang, I Vokler, P LoCascio, D Xu, ...
Bioinformatics 19 (15), 1985-1996, 2003
362003
PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction
J Guo, K Ellrott, WJ Chung, D Xu, S Passovets, Y Xu
Nucleic acids research 32 (suppl_2), W522-W525, 2004
312004
Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron
Q Xu, P Abdubek, T Astakhova, HL Axelrod, C Bakolitsa, X Cai, D Carlton, ...
Acta Crystallographica Section F: Structural Biology and Crystallization …, 2010
302010
The system can't perform the operation now. Try again later.
Articles 1–20