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Rosa Lundbye Allesøe
Rosa Lundbye Allesøe
PhD student, Novo Nordisk foundation Center for Protein Research
Verificeret mail på cpr.ku.dk
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Citeret af
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ResFinder 4.0 for predictions of phenotypes from genotypes
V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ...
Journal of Antimicrobial Chemotherapy 75 (12), 3491-3500, 2020
22822020
Neoantigen vaccine generates intratumoral T cell responses in phase Ib glioblastoma trial
DB Keskin, AJ Anandappa, J Sun, I Tirosh, ND Mathewson, S Li, ...
Nature 565 (7738), 234-239, 2019
12772019
PointFinder: a novel web tool for WGS-based detection of antimicrobial resistance associated with chromosomal point mutations in bacterial pathogens
E Zankari, R Allesøe, KG Joensen, LM Cavaco, O Lund, FM Aarestrup
Journal of Antimicrobial Chemotherapy 72 (10), 2764-2768, 2017
7222017
Personal neoantigen vaccines induce persistent memory T cell responses and epitope spreading in patients with melanoma
Z Hu, DE Leet, RL Allesøe, G Oliveira, S Li, AM Luoma, J Liu, J Forman, ...
Nature medicine 27 (3), 515-525, 2021
4122021
Improved metagenome binning and assembly using deep variational autoencoders
JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ...
Nature biotechnology 39 (5), 555-560, 2021
3912021
SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data
H Kaya, H Hasman, J Larsen, M Stegger, TB Johannesen, RL Allesøe, ...
Msphere 3 (1), 10.1128/msphere. 00612-17, 2018
255*2018
Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles
L Roer, V Tchesnokova, R Allesøe, M Muradova, S Chattopadhyay, ...
Journal of Clinical Microbiology 55 (8), 2538-2543, 2017
1922017
CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles
L Roer, TB Johannesen, F Hansen, M Stegger, V Tchesnokova, ...
Journal of clinical microbiology 56 (4), 10.1128/jcm. 00063-18, 2018
592018
Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models
RL Allesøe, AT Lundgaard, R Hernández Medina, A Aguayo-Orozco, ...
Nature biotechnology 41 (3), 399-408, 2023
572023
Immunity and mental illness: findings from a Danish population-based immunogenetic study of seven psychiatric and neurodevelopmental disorders
R Nudel, ME Benros, MD Krebs, RL Allesøe, CK Lemvigh, ...
European Journal of Human Genetics 27 (9), 1445-1455, 2019
522019
SCCmecFinder, a web-based tool for typing of staphylococcal cassette chromosome mec in Staphylococcus aureus using whole-genome sequence data. mSphere 3: e00612-17
H Kaya, H Hasman, J Larsen, M Stegger, TB Johannesen, RL Allesøe, ...
Article PubMed PubMed Central, 2018
512018
RNase H–dependent PCR-enabled T-cell receptor sequencing for highly specific and efficient targeted sequencing of T-cell receptor mRNA for single-cell and repertoire analysis
S Li, J Sun, R Allesøe, K Datta, Y Bao, G Oliveira, J Forman, R Jin, ...
Nature protocols 14 (8), 2571-2594, 2019
402019
ResFinder 4.0 for predictions of phenotypes from genotypes., 2020, 75
V Bortolaia, RS Kaas, E Ruppe, MC Roberts, S Schwarz, V Cattoir, ...
DOI: https://doi. org/10.1093/jac/dkaa345, 3491-3500, 0
36
Deep learning for cross-diagnostic prediction of mental disorder diagnosis and prognosis using Danish nationwide register and genetic data
RL Allesøe, WK Thompson, J Bybjerg-Grauholm, DM Hougaard, ...
JAMA psychiatry 80 (2), 146-155, 2023
252023
Genetic factors underlying the bidirectional relationship between autoimmune and mental disorders–findings from a Danish population-based study
X Liu, R Nudel, WK Thompson, V Appadurai, AJ Schork, A Buil, ...
Brain, behavior, and immunity 91, 10-23, 2021
242021
Direct whole-genome sequencing of Plasmodium falciparum specimens from dried erythrocyte spots
S Nag, PE Kofoed, J Ursing, CK Lemvigh, RL Allesøe, A Rodrigues, ...
Malaria journal 17, 1-8, 2018
182018
Deep learning–based integration of genetics with registry data for stratification of schizophrenia and depression
RL Allesøe, R Nudel, WK Thompson, Y Wang, M Nordentoft, AD Børglum, ...
Science advances 8 (26), eabi7293, 2022
122022
A large-scale investigation into the role of classical HLA loci in multiple types of severe infections, with a focus on overlaps with autoimmune and mental disorders
R Nudel, RL Allesøe, WK Thompson, T Werge, S Rasmussen, ME Benros
Journal of translational medicine 19 (1), 230, 2021
92021
An immunogenetic investigation of 30 autoimmune and autoinflammatory diseases and their links to psychiatric disorders in a nationwide sample
R Nudel, RL Allesøe, T Werge, WK Thompson, S Rasmussen, ME Benros
Immunology 168 (4), 622-639, 2023
82023
Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
J Ahrenfeldt, M Waisi, IC Loft, PTLC Clausen, R Allesøe, J Szarvas, ...
Scientific reports 10 (1), 3033, 2020
62020
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