|CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing|
TG Montague, JM Cruz, JA Gagnon, GM Church, E Valen
Nucleic acids research 42 (W1), W401-W407, 2014
|Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs|
JA Gagnon, E Valen, SB Thyme, P Huang, L Ahkmetova, A Pauli, ...
PLoS One 9 (5), e98186, 2014
|CHOPCHOP v2: a web tool for the next generation of CRISPR genome engineering|
K Labun, TG Montague, JA Gagnon, SB Thyme, E Valen
Nucleic acids research 44 (W1), W272-W276, 2016
|Toddler: an embryonic signal that promotes cell movement via Apelin receptors|
A Pauli, ML Norris, E Valen, GL Chew, JA Gagnon, S Zimmerman, ...
Science 343 (6172), 2014
|Whole organism lineage tracing by combinatorial and cumulative genome editing|
A McKenna, G Findlay, JA Gagnon, M Horwitz, AF Schier, J Shendure
Science 353 (6298), aaf7907, 2016
|Osteoblast differentiation and skeletal development are regulated by Mdm2–p53 signaling|
CJ Lengner, HA Steinman, J Gagnon, TW Smith, JE Henderson, ...
The Journal of cell biology 172 (6), 909-921, 2006
|Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain|
B Raj, DE Wagner, A McKenna, S Pandey, AM Klein, J Shendure, ...
Nature biotechnology 36 (5), 442-450, 2018
|Efficient CRISPR-Cas9-mediated generation of knockin human pluripotent stem cells lacking undesired mutations at the targeted locus|
FT Merkle, WM Neuhausser, D Santos, E Valen, JA Gagnon, K Maas, ...
Cell reports 11 (6), 875-883, 2015
|Multiple Kinesin Motors Coordinate Cytoplasmic RNA Transport on a Subpopulation of Microtubules in Xenopus Oocytes|
TJ Messitt, JA Gagnon, JA Kreiling, CA Pratt, YJ Yoon, KL Mowry
Developmental cell 15 (3), 426-436, 2008
|Molecular motors: directing traffic during RNA localization|
JA Gagnon, KL Mowry
Critical reviews in biochemistry and molecular biology 46 (3), 229-239, 2011
|PTB/hnRNP I is required for RNP remodeling during RNA localization in Xenopus oocytes|
RA Lewis, JA Gagnon, KL Mowry
Molecular and cellular biology 28 (2), 678-686, 2008
|Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9|
J Liu, FT Merkle, AV Gandhi, JA Gagnon, IG Woods, CN Chiu, ...
Development 142 (6), 1113-1124, 2015
|Recording development with single cell dynamic lineage tracing|
A McKenna, JA Gagnon
Development 146 (12), dev169730, 2019
|Expansion microscopy of zebrafish for neuroscience and developmental biology studies|
L Freifeld, I Odstrcil, D Förster, A Ramirez, JA Gagnon, O Randlett, ...
Proceedings of the National Academy of Sciences 114 (50), E10799-E10808, 2017
|Directional transport is mediated by a Dynein-dependent step in an RNA localization pathway|
JA Gagnon, JA Kreiling, EA Powrie, TR Wood, KL Mowry
PLoS Biology 11 (4), e1001551, 2013
|Nodal patterning without lefty inhibitory feedback is functional but fragile|
KW Rogers, ND Lord, JA Gagnon, A Pauli, S Zimmerman, DC Aksel, ...
Elife 6, e28785, 2017
|Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR–Cas9 barcodes by scGESTALT|
B Raj, JA Gagnon, AF Schier
Nature protocols 13 (11), 2685-2713, 2018
|The primary role of zebrafish nanog is in extra-embryonic tissue|
JA Gagnon, K Obbad, AF Schier
Development 145 (1), dev147793, 2018
|Accurate analysis of genuine CRISPR editing events with ampliCan|
K Labun, X Guo, A Chavez, G Church, JA Gagnon, E Valen
Genome research 29 (5), 843-847, 2019
|Conserved regulation of Nodal-mediated left-right patterning in zebrafish and mouse|
TG Montague, JA Gagnon, AF Schier
Development 145 (24), 2018