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Hayan Lee
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The pineapple genome and the evolution of CAM photosynthesis
R Ming, R VanBuren, CM Wai, H Tang, MC Schatz, JE Bowers, E Lyons, ...
Nature genetics 47 (12), 1435-1442, 2015
4452015
Piercing the dark matter: bioinformatics of long-range sequencing and mapping
FJ Sedlazeck, H Lee, CA Darby, MC Schatz
Nature Reviews Genetics 19 (6), 329-346, 2018
3492018
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica
MC Schatz, LG Maron, JC Stein, AH Wences, J Gurtowski, E Biggers, ...
Genome biology 15 (11), 1-16, 2014
2892014
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
2232020
Third-generation sequencing and the future of genomics
H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ...
BioRxiv, 048603, 2016
1492016
Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score
H Lee, MC Schatz
Bioinformatics 28 (16), 2097-2105, 2012
1402012
SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips
S Marcus, H Lee, MC Schatz
Bioinformatics 30 (24), 3476-3483, 2014
1172014
Error correction and assembly complexity of single molecule sequencing reads
H Lee, J Gurtowski, S Yoo, S Marcus, WR McCombie, M Schatz
BioRxiv, 006395, 2014
1102014
Virmid: accurate detection of somatic mutations with sample impurity inference
S Kim, K Jeong, K Bhutani, JH Lee, A Patel, E Scott, H Nam, H Lee, ...
Genome biology 14 (8), 1-17, 2013
782013
Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop
GM Souza, MA Van Sluys, CG Lembke, H Lee, GRA Margarido, CT Hotta, ...
GigaScience 8 (12), giz129, 2019
702019
Lifelong physical activity is associated with promoter hypomethylation of genes involved in metabolism, myogenesis, contractile properties and oxidative stress resistance in …
MR Sailani, JF Halling, HD Møller, H Lee, P Plomgaard, H Pilegaard, ...
Scientific reports 9 (1), 1-11, 2019
612019
Hybrid assembly with long and short reads improves discovery of gene family expansions
JR Miller, P Zhou, J Mudge, J Gurtowski, H Lee, T Ramaraj, BP Walenz, ...
BMC genomics 18 (1), 1-12, 2017
492017
Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment
M Roodgar, BH Good, NR Garud, S Martis, M Avula, W Zhou, ...
Genome research 31 (8), 1433-1446, 2021
392021
Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma
W Cao, H Lee, W Wu, A Zaman, S McCorkle, M Yan, J Chen, Q Xing, ...
Nature communications 11 (1), 1-19, 2020
382020
On the security of intra-car wireless sensor networks
H Lee, HM Tsai, OK Tonguz
2009 IEEE 70th Vehicular Technology Conference Fall, 1-5, 2009
222009
Third-generation sequencing and the future of genomics. bioRxiv 048603
H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ...
162016
Error correction and assembly complexity of single molecule sequencing reads. bioRxiv 006395
H Lee, J Gurtowski, S Yoo, S Marcus, WR McCombie, M Schatz
DOI: https://10.1101/006395, 2014
82014
Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding
M Roodgar, A Babveyh, LH Nguyen, W Zhou, R Sinha, H Lee, JB Hanks, ...
Gigascience 9 (7), giaa069, 2020
52020
SplitMEM: Graphical pan-genome analysis with suffix skips
S Marcus, H Lee, MC Schatz
bioRxiv, 003954, 2014
22014
How Low Can You Go? Calling Robust ATAC-Seq Peaks Through Read Down-Sampling
J Lihm, S Ahrens, S Ballouz, H Lee, M Crow, J Tollkuhn, S McCarthy, B Li, ...
Calling Robust ATAC-Seq Peaks Through Read Down-Sampling (October 15, 2018), 2018
2018
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