| The pineapple genome and the evolution of CAM photosynthesis R Ming, R VanBuren, CM Wai, H Tang, MC Schatz, JE Bowers, E Lyons, ... Nature genetics 47 (12), 1435-1442, 2015 | 514 | 2015 |
| Piercing the dark matter: bioinformatics of long-range sequencing and mapping FJ Sedlazeck, H Lee, CA Darby, MC Schatz Nature Reviews Genetics 19 (6), 329-346, 2018 | 466 | 2018 |
| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 375 | 2020 |
| Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica MC Schatz, LG Maron, JC Stein, AH Wences, J Gurtowski, E Biggers, ... Genome biology 15, 1-16, 2014 | 324 | 2014 |
| Third-generation sequencing and the future of genomics H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ... BioRxiv, 048603, 2016 | 171 | 2016 |
| Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score H Lee, MC Schatz Bioinformatics 28 (16), 2097-2105, 2012 | 162 | 2012 |
| SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips S Marcus, H Lee, MC Schatz Bioinformatics 30 (24), 3476-3483, 2014 | 133 | 2014 |
| Error correction and assembly complexity of single molecule sequencing reads H Lee, J Gurtowski, S Yoo, S Marcus, WR McCombie, M Schatz BioRxiv, 006395, 2014 | 121 | 2014 |
| Lifelong physical activity is associated with promoter hypomethylation of genes involved in metabolism, myogenesis, contractile properties and oxidative stress resistance in … MR Sailani, JF Halling, HD Møller, H Lee, P Plomgaard, H Pilegaard, ... Scientific reports 9 (1), 3272, 2019 | 96 | 2019 |
| Virmid: accurate detection of somatic mutations with sample impurity inference S Kim, K Jeong, K Bhutani, JH Lee, A Patel, E Scott, H Nam, H Lee, ... Genome biology 14, 1-17, 2013 | 83 | 2013 |
| Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop GM Souza, MA Van Sluys, CG Lembke, H Lee, GRA Margarido, CT Hotta, ... GigaScience 8 (12), giz129, 2019 | 82 | 2019 |
| Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma W Cao, H Lee, W Wu, A Zaman, S McCorkle, M Yan, J Chen, Q Xing, ... Nature communications 11 (1), 3675, 2020 | 77 | 2020 |
| Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment M Roodgar, BH Good, NR Garud, S Martis, M Avula, W Zhou, ... Genome research 31 (8), 1433-1446, 2021 | 70 | 2021 |
| Hybrid assembly with long and short reads improves discovery of gene family expansions JR Miller, P Zhou, J Mudge, J Gurtowski, H Lee, T Ramaraj, BP Walenz, ... BMC genomics 18, 1-12, 2017 | 64 | 2017 |
| On the security of intra-car wireless sensor networks H Lee, HM Tsai, OK Tonguz 2009 IEEE 70th Vehicular Technology Conference Fall, 1-5, 2009 | 25 | 2009 |
| Third-generation sequencing and the future of genomics. bioRxiv 048603 H Lee, J Gurtowski, S Yoo, M Nattestad, S Marcus, S Goodwin, ... | 20 | 2016 |
| Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding M Roodgar, A Babveyh, LH Nguyen, W Zhou, R Sinha, H Lee, JB Hanks, ... Gigascience 9 (7), giaa069, 2020 | 9 | 2020 |
| TET1 and TDG suppress inflammatory response in intestinal tumorigenesis: implications for colorectal tumors with the CpG island methylator phenotype R Tricarico, J Madzo, G Scher, M Cohen, J Jelinek, S Maegawa, ... Gastroenterology 164 (6), 921-936. e1, 2023 | 6 | 2023 |
| Error correction and assembly complexity of single molecule sequencing reads. bioRxiv 006395 H Lee, J Gurtowski, S Yoo, S Marcus, WR McCombie, M Schatz DOI: https://10.1101/006395, 2014 | 6 | 2014 |
| Ultra high-throughput whole-genome methylation sequencing reveals trajectories in precancerous polyps to early colorectal adenocarcinoma H Lee, G Krieger, T Clark, A Khan, CR Hanson, Y Zhu, N Bararpour, ... bioRxiv, 2022.05. 30.494076, 2022 | 3 | 2022 |
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityVerified email at cs.jhu.edu
