Brent S Pedersen
Brent S Pedersen
University of Utah, Human Genetics
Verified email at genetics.utah.edu - Homepage
TitleCited byYear
Nanopore sequencing and assembly of a human genome with ultra-long reads
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...
Nature biotechnology 36 (4), 338, 2018
5632018
Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis
TE Fingerlin, E Murphy, W Zhang, AL Peljto, KK Brown, MP Steele, ...
Nature genetics 45 (6), 613, 2013
4282013
Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
BC Thomas, B Pedersen, M Freeling
Genome research 16 (7), 934-946, 2006
3482006
Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids
E Lyons, B Pedersen, J Kane, M Alam, R Ming, H Tang, X Wang, ...
Plant physiology 148 (4), 1772-1781, 2008
2952008
Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs.
MR Woodhouse, JC Schnable, BS Pedersen, E Lyons, D Lisch, ...
PLoS biology 8 (6), e1000409-e1000409, 2010
2172010
Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
RK Dale, BS Pedersen, AR Quinlan
Bioinformatics 27 (24), 3423-3424, 2011
1872011
The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the rosids
E Lyons, B Pedersen, J Kane, M Freeling
Tropical Plant Biology 1 (3-4), 181-190, 2008
1722008
Comb-p: software for combining, analyzing, grouping and correcting spatially correlated P-values
BS Pedersen, DA Schwartz, IV Yang, KJ Kechris
Bioinformatics 28 (22), 2986-2988, 2012
1552012
DNA methylation and childhood asthma in the inner city
IV Yang, BS Pedersen, A Liu, GT O'Connor, SJ Teach, M Kattan, ...
Journal of Allergy and Clinical Immunology 136 (1), 69-80, 2015
1372015
Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
M Freeling, E Lyons, B Pedersen, M Alam, R Ming, D Lisch
Genome research 18 (12), 1924-1937, 2008
1342008
Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy
H Tang, MR Woodhouse, F Cheng, JC Schnable, BS Pedersen, G Conant, ...
Genetics 190 (4), 1563-1574, 2012
1312012
Large-Scale Management of Insect Resistance to Transgenic Cotton in Arizona-Can Transgenic Insecticidal Crops be Sustained?
Y Carrière, TJ Dennehy, B Pedersen, S Haller, C Ellers-Kirk, L Antilla, ...
Journal of Economic Entomology 94 (2), 315-325, 2001
1272001
Screening synteny blocks in pairwise genome comparisons through integer programming
H Tang, E Lyons, B Pedersen, JC Schnable, AH Paterson, M Freeling
BMC bioinformatics 12 (1), 102, 2011
922011
Sources, sinks, and the zone of influence of refuges for managing insect resistance to Bt crops
Y Carrière, P Dutilleul, C Ellers-Kirk, B Pedersen, S Haller, L Antilla, ...
Ecological Applications 14 (6), 1615-1623, 2004
832004
Relationship of DNA methylation and gene expression in idiopathic pulmonary fibrosis
IV Yang, BS Pedersen, E Rabinovich, CE Hennessy, EJ Davidson, ...
American journal of respiratory and critical care medicine 190 (11), 1263-1272, 2014
822014
MethylCoder: software pipeline for bisulfite-treated sequences
B Pedersen, TF Hsieh, C Ibarra, RL Fischer
Bioinformatics 27 (17), 2435-2436, 2011
792011
BioStar: an online question & answer resource for the bioinformatics community
LD Parnell, P Lindenbaum, K Shameer, GM Dall'Olio, DC Swan, ...
PLoS computational biology 7 (10), 2011
772011
GOATOOLS: A Python library for Gene Ontology analyses
DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, AW Vesztrocy, ...
Scientific reports 8 (1), 1-17, 2018
682018
Fast and accurate alignment of long bisulfite-seq reads
BS Pedersen, K Eyring, S De, IV Yang, DA Schwartz
arXiv preprint arXiv:1401.1129, 2014
612014
Single vs. multiple introduction in biological control: the roles of parasitoid efficiency, antagonism and niche overlap
BS Pedersen, NJ Mills
Journal of Applied Ecology 41 (5), 973-984, 2004
562004
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Articles 1–20