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David Dylus
David Dylus
Scientist, Systems Biology, Roche
Verified email at roche.com
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Cited by
Year
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces
AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ...
Nucleic acids research 46 (D1), D477-D485, 2018
2062018
Phylo.io : Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web
O Robinson, D Dylus, C Dessimoz
Molecular biology and evolution 33 (8), 2163-2166, 2016
1592016
OMA standalone: orthology inference among public and custom genomes and transcriptomes
AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ...
Genome research 29 (7), 1152-1163, 2019
672019
Expression of skeletogenic genes during arm regeneration in the brittle star Amphiura filiformis
A Czarkwiani, DV Dylus, P Oliveri
Gene Expression Patterns 13 (8), 464-472, 2013
512013
The phylogenetic range of bacterial and viral pathogens of vertebrates
LP Shaw, AD Wang, D Dylus, M Meier, G Pogacnik, C Dessimoz, ...
Molecular ecology 29 (17), 3361-3379, 2020
442020
Large-scale gene expression study in the ophiuroid Amphiura filiformis provides insights into evolution of gene regulatory networks
DV Dylus, A Czarkwiani, J Stångberg, O Ortega-Martinez, S Dupont, ...
Evodevo 7 (1), 1-17, 2016
442016
Skeletal regeneration in the brittle star Amphiura filiformis
A Czarkwiani, C Ferrario, DV Dylus, M Sugni, P Oliveri
Frontiers in zoology 13 (1), 1-17, 2016
432016
Developmental transcriptomics of the brittle star Amphiura filiformis reveals gene regulatory network rewiring in echinoderm larval skeleton evolution
DV Dylus, A Czarkwiani, LM Blowes, MR Elphick, P Oliveri
Genome biology 19 (1), 1-17, 2018
262018
FGF signalling plays similar roles in development and regeneration of the skeleton in the brittle star Amphiura filiformis
A Czarkwiani, DV Dylus, L Carballo, P Oliveri
Development 148 (10), dev180760, 2021
142021
RecPhyloXML: a format for reconciled gene trees
W Duchemin, G Gence, AM Arigon Chifolleau, L Arvestad, MS Bansal, ...
Bioinformatics 34 (21), 3646-3652, 2018
122018
NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test
D Dylus, T Pillonel, O Opota, D Wüthrich, HMB Seth-Smith, A Egli, S Leo, ...
Frontiers in microbiology 11, 591093, 2020
72020
New genome assembly of the barn owl (Tyto alba alba)
AL Ducrest, S Neuenschwander, E Schmid‐Siegert, M Pagni, C Train, ...
Ecology and evolution 10 (5), 2284-2298, 2020
62020
How to build phylogenetic species trees with OMA
D Dylus, Y Nevers, AM Altenhoff, A Gürtler, C Dessimoz, NM Glover
F1000Research 9, 2020
42020
Bifurcation search via feedback loop breaking in biochemical signaling pathways with time delay
S Waldherr, D Dylus, F Allgöwer
Asian Journal of Control 13 (5), 691-700, 2011
42011
Extracellular matrix gene expression during arm regeneration in Amphiura filiformis
C Ferrario, A Czarkwiani, DV Dylus, L Piovani, MD Candia Carnevali, ...
Cell and tissue research 381 (3), 411-426, 2020
32020
Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree
B Boeckmann, D Dylus, S Moretti, A Altenhoff, CM Train, E Kriventseva, ...
biorxiv, 181966, 2017
32017
How to build phylogenetic species trees with OMA [version 2; peer review: 2 approved with reservations]
D Dylus, Y Nevers, AM Altenhoff, A Gürtler, C Dessimoz, NM Glover
F1000Research 9, 2022
2022
Read2Tree: scalable and accurate phylogenetic trees from raw reads
D Dylus, AM Altenhoff, S Majidian, FJ Sedlazeck, C Dessimoz
bioRxiv, 2022
2022
Clinical bioinformatics for microbial genomics and metagenomics: an ESCMID Postgraduate Technical Workshop.
G Greub, PM Palagi, D Dylus, A Egli, T Pillonel, JWA Rossen, ...
Microbes and infection, 2020
2020
Corrigendum: OMA standalone: orthology inference among public and custom genomes and transcriptomes
AM Altenhoff, J Levy, M Zarowiecki, B Tomiczek, AW Vesztrocy, ...
Genome Research 30 (6), 9382, 2020
2020
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