Kirill Afonin
Kirill Afonin
Associate Professor of Chemistry at UNC Charlotte
Verified email at uncc.edu - Homepage
TitleCited byYear
In vitro assembly of cubic RNA-based scaffolds designed in silico
KA Afonin, E Bindewald, AJ Yaghoubian, N Voss, E Jacovetty, BA Shapiro, ...
Nature nanotechnology 5 (9), 676, 2010
2752010
Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes
WW Grabow, P Zakrevsky, KA Afonin, A Chworos, BA Shapiro, L Jaeger
Nano letters 11 (2), 878-887, 2011
1812011
Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine
KA Afonin, WW Grabow, FM Walker, E Bindewald, MA Dobrovolskaia, ...
Nature protocols 6 (12), 2022, 2011
1452011
Multifunctional RNA nanoparticles
KA Afonin, M Viard, AY Koyfman, AN Martins, WK Kasprzak, M Panigaj, ...
Nano letters 14 (10), 5662-5671, 2014
1072014
Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs
KA Afonin, M Kireeva, WW Grabow, M Kashlev, L Jaeger, BA Shapiro
Nano letters 12 (10), 5192-5195, 2012
992012
Activation of different split functionalities on re-association of RNA–DNA hybrids
KA Afonin, M Viard, AN Martins, SJ Lockett, AE Maciag, EO Freed, ...
Nature nanotechnology 8 (4), 296, 2013
862013
Triggering of RNA Interference with RNA–RNA, RNA–DNA, and DNA–RNA Nanoparticles
KA Afonin, M Viard, I Kagiampakis, CL Case, MA Dobrovolskaia, ...
ACS nano 9 (1), 251-259, 2014
772014
In Silico Design and Enzymatic Synthesis of Functional RNA Nanoparticles
KA Afonin, WK Kasprzak, E Bindewald, M Kireeva, M Viard, M Kashlev, ...
Accounts of chemical research 47 (6), 1731-1741, 2014
642014
Specific RNA self-assembly with minimal paranemic motifs
KA Afonin, DJ Cieply, NB Leontis
Journal of the American Chemical Society 130 (1), 93-102, 2008
632008
Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots
E Bindewald, K Afonin, L Jaeger, BA Shapiro
ACS nano 5 (12), 9542-9551, 2011
612011
TokenRNA: a new type of sequence‐specific, label‐free fluorescent biosensor for folded RNA molecules
KA Afonin, EO Danilov, IV Novikova, NB Leontis
Chembiochem 9 (12), 1902-1905, 2008
502008
In silico, in vitro, and in vivo studies indicate the potential use of bolaamphiphiles for therapeutic siRNAs delivery
T Kim, KA Afonin, M Viard, AY Koyfman, S Sparks, E Heldman, S Grinberg, ...
Molecular Therapy-Nucleic Acids 2, e80, 2013
482013
Co-transcriptional production of RNA–DNA hybrids for simultaneous release of multiple split functionalities
KA Afonin, R Desai, M Viard, ML Kireeva, E Bindewald, CL Case, ...
Nucleic acids research 42 (3), 2085-2097, 2013
422013
Generating new specific RNA interaction interfaces using C-loops
KA Afonin, NB Leontis
Journal of the American Chemical Society 128 (50), 16131-16137, 2006
422006
Computational and experimental characterization of RNA cubic nanoscaffolds
KA Afonin, W Kasprzak, E Bindewald, PS Puppala, AR Diehl, KT Hall, ...
Methods 67 (2), 256-265, 2014
412014
Functionally-interdependent shape-switching nanoparticles with controllable properties
JR Halman, E Satterwhite, B Roark, M Chandler, M Viard, A Ivanina, ...
Nucleic acids research 45 (4), 2210-2220, 2017
352017
Multistrand structure prediction of nucleic acid assemblies and design of RNA switches
E Bindewald, KA Afonin, M Viard, P Zakrevsky, T Kim, BA Shapiro
Nano letters 16 (3), 1726-1735, 2016
322016
Attenuation of loop-receptor interactions with pseudoknot formation
KA Afonin, YP Lin, ER Calkins, L Jaeger
Nucleic acids research 40 (5), 2168-2180, 2011
312011
Engineered RNA nanodesigns for applications in RNA nanotechnology
KA Afonin, B Lindsay, BA Shapiro
DNA and RNA Nanotechnology 1 (1), 2013
292013
The use of minimal RNA toeholds to trigger the activation of multiple functionalities
KA Afonin, M Viard, P Tedbury, E Bindewald, L Parlea, M Howington, ...
Nano letters 16 (3), 1746-1753, 2016
282016
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