Jakob Hull Havgaard
Jakob Hull Havgaard
University of Copenhagen
Verified email at rth.dk - Homepage
TitleCited byYear
Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
E Torarinsson, M Sawera, JH Havgaard, M Fredholm, J Gorodkin
Genome research 16 (7), 885-889, 2006
1912006
Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%
JH Havgaard, RB Lyngsø, GD Stormo, J Gorodkin
Bioinformatics 21 (9), 1815-1824, 2005
1822005
Multiple structural alignment and clustering of RNA sequences
E Torarinsson, JH Havgaard, J Gorodkin
Bioinformatics 23 (8), 926-932, 2007
1722007
Fast pairwise structural RNA alignments by pruning of the dynamical programming matrix
JH Havgaard, E Torarinsson, J Gorodkin
PLOS computational biology 3 (10), e193, 2007
1222007
The foldalign web server for pairwise structural RNA alignment and mutual motif search
JH Havgaard, RB Lyngsø, J Gorodkin
Nucleic acids research 33 (suppl_2), W650-W653, 2005
882005
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
J Gorodkin, S Cirera, J Hedegaard, MJ Gilchrist, F Panitz, C Jørgensen, ...
Genome biology 8 (4), R45, 2007
792007
De novo prediction of structured RNAs from genomic sequences
J Gorodkin, IL Hofacker, E Torarinsson, Z Yao, JH Havgaard, WL Ruzzo
Trends in biotechnology 28 (1), 9-19, 2010
742010
Structural profiles of human miRNA families from pairwise clustering
B Kaczkowski, E Torarinsson, K Reiche, JH Havgaard, PF Stadler, ...
Bioinformatics 25 (3), 291-294, 2008
552008
Semiautomated improvement of RNA alignments
ES Andersen, A Lind-Thomsen, B Knudsen, SE Kristensen, JH Havgaard, ...
Rna 13 (11), 1850-1859, 2007
472007
SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation
F Panitz, H Stengaard, H Hornshøj, J Gorodkin, J Hedegaard, S Cirera, ...
Bioinformatics 23 (13), i387-i391, 2007
362007
MicroRNA sequence motifs reveal asymmetry between the stem arms
J Gorodkin, JH Havgaard, M Ensterö, M Sawera, P Jensen, M Öhman, ...
Computational biology and chemistry 30 (4), 249-254, 2006
212006
Structured RNAs and synteny regions in the pig genome
C Anthon, H Tafer, JH Havgaard, B Thomsen, J Hedegaard, SE Seemann, ...
BMC genomics 15 (1), 459, 2014
202014
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment
D Sundfeld, JH Havgaard, ACMA de Melo, J Gorodkin
Bioinformatics 32 (8), 1238-1240, 2015
162015
RNA structural alignments, part I: Sankoff-based approaches for structural alignments
JH Havgaard, J Gorodkin
RNA Sequence, Structure, and Function: Computational and Bioinformatic …, 2014
162014
RNAscClust : clustering RNA sequences using structure conservation and graph based motifs
M Miladi, A Junge, F Costa, SE Seemann, JH Havgaard, J Gorodkin, ...
Bioinformatics 33 (14), 2089-2096, 2017
152017
CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters
F Alkan, A Wenzel, C Anthon, JH Havgaard, J Gorodkin
Genome biology 19 (1), 177, 2018
102018
Comparative ncRNA gene and structure prediction using Foldalign and FoldalignM
J Havgaard, S Kaur, J Gorodkin
Current protocols in bioinformatics 39 (1), 12.11. 1-12.11. 15, 2012
82012
Assessing the miRNA sponge potential of RUNX1T1 in t (8; 21) acute myeloid leukemia
A Junge, R Zandi, JH Havgaard, J Gorodkin, JB Cowland
Gene 615, 35-40, 2017
62017
Optimizing RNA structures by sequence extensions using RNAcop
N Hecker, M Christensen-Dalsgaard, SE Seemann, JH Havgaard, ...
Nucleic acids research 43 (17), 8135-8145, 2015
42015
CUDA-Sankoff: using GPU to accelerate the pairwise structural RNA alignment
D Sundfeld, JH Havgaard, J Gorodkin, ACMA De Melo
2017 25th Euromicro International Conference on Parallel, Distributed and …, 2017
32017
The system can't perform the operation now. Try again later.
Articles 1–20