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José Juan Almagro Armenteros
José Juan Almagro Armenteros
Bekræftet mail på stanford.edu - Startside
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SignalP 5.0 improves signal peptide predictions using deep neural networks
JJ Almagro Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, ...
Nature biotechnology 37 (4), 420-423, 2019
24072019
DeepLoc: prediction of protein subcellular localization using deep learning
JJ Almagro Armenteros, CK Sønderby, SK Sønderby, H Nielsen, ...
Bioinformatics 33 (21), 3387-3395, 2017
7012017
Detecting sequence signals in targeting peptides using deep learning
JJA Armenteros, M Salvatore, O Emanuelsson, O Winther, G Von Heijne, ...
Life science alliance 2 (5), 2019
3462019
An introduction to deep learning on biological sequence data: examples and solutions
VI Jurtz, AR Johansen, M Nielsen, JJ Almagro Armenteros, H Nielsen, ...
Bioinformatics 33 (22), 3685-3690, 2017
1332017
SignalP 6.0 predicts all five types of signal peptides using protein language models
F Teufel, JJ Almagro Armenteros, AR Johansen, MH Gíslason, SI Pihl, ...
Nature biotechnology, 1-3, 2022
1162022
Improved metagenome binning and assembly using deep variational autoencoders
JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ...
Nature biotechnology 39 (5), 555-560, 2021
104*2021
Modeling of waning immunity after SARS-CoV-2 vaccination and influencing factors
L Pérez-Alós, JJA Armenteros, JR Madsen, CB Hansen, I Jarlhelt, ...
Nature communications 13 (1), 1-11, 2022
232022
Prediction of GPI-anchored proteins with pointer neural networks
MH Gíslason, H Nielsen, JJA Armenteros, AR Johansen
Current Research in Biotechnology 3, 6-13, 2021
232021
DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks
J Hallgren, KD Tsirigos, MD Pedersen, JJA Armenteros, P Marcatili, ...
bioRxiv, 2022
152022
Language modelling for biological sequences–curated datasets and baselines
JJA Armenteros, AR Johansen, O Winther, H Nielsen
BioRxiv, 2020
122020
DeepLoc 2.0: multi-label subcellular localization prediction using protein language models
V Thumuluri, JJ Almagro Armenteros, AR Johansen, H Nielsen, O Winther
Nucleic Acids Research, 2022
102022
Decline in antibody concentration 6 months after two doses of SARS-CoV-2 BNT162b2 vaccine in solid organ transplant recipients and healthy controls
SR Hamm, DL Møller, L Pérez-Alós, CB Hansen, MM Pries-Heje, ...
Frontiers in immunology 13, 2022
72022
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii
KH Iversen, LH Rasmussen, K Al-Nakeeb, JJA Armenteros, CS Jensen, ...
Scientific reports 10 (1), 1-11, 2020
72020
Deep protein representations enable recombinant protein expression prediction
HM Martiny, JJA Armenteros, AR Johansen, J Salomon, H Nielsen
Computational Biology and Chemistry 95, 107596, 2021
32021
NetSolP: predicting protein solubility in Escherichia coli using language models
V Thumuluri, HM Martiny, JJ Almagro Armenteros, J Salomon, H Nielsen, ...
Bioinformatics 38 (4), 941-946, 2022
22022
Spectrum of protein location in proteomes captures evolutionary relationship between species
V Marot-Lassauzaie, T Goldberg, JJA Armenteros, H Nielsen, B Rost
Journal of molecular evolution 89 (8), 544-553, 2021
22021
Temporal patterns of multi-morbidity in 570157 ischemic heart disease patients: a nationwide cohort study
AD Haue, JJA Armenteros, PC Holm, R Eriksson, PL Moseley, LV Køber, ...
Cardiovascular Diabetology 21 (1), 1-13, 2022
12022
Antibody responses and risk factors associated with impaired immunological outcomes following two doses of BNT162b2 COVID-19 vaccination in patients with chronic pulmonary diseases
ZB Harboe, SR Hamm, L Pérez-Alós, P Sivapalan, H Priemé, T Wilcke, ...
BMJ Open Respiratory Research 9 (1), e001268, 2022
12022
Factors influencing the immune response over 15 months after SARS‐CoV‐2 infection: A longitudinal population‐wide study in the Faroe Islands
MS Petersen, L Pérez‐Alós, JJA Armenteros, CB Hansen, J Páll Fjallsbak, ...
Journal of internal medicine, 2022
2022
Temporal dynamics of the multi-omic response to endurance exercise training across tissues
D Amar, NR Gay, PMJ Beltran, JN Adkins, JJA Armenteros, E Ashley, ...
bioRxiv, 2022
2022
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