Oksana Lukjancenko
Oksana Lukjancenko
Clinical Microbiomics A/S
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Comparison of 61 sequenced Escherichia coli genomes
O Lukjancenko, TM Wassenaar, DW Ussery
Microbial ecology 60 (4), 708-720, 2010
5482010
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ...
Nature communications 10 (1), 1-12, 2019
2422019
Benchmarking of methods for genomic taxonomy
MV Larsen, S Cosentino, O Lukjancenko, D Saputra, S Rasmussen, ...
Journal of clinical microbiology 52 (5), 1529-1539, 2014
1692014
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
P Munk, BE Knudsen, O Lukjancenko, ASR Duarte, L Van Gompel, ...
Nature microbiology 3 (8), 898-908, 2018
1202018
Genome sequencing identifies two nearly unchanged strains of persistent Listeria monocytogenes isolated at two different fish processing plants sampled 6 years apart
A Holch, K Webb, O Lukjancenko, D Ussery, BM Rosenthal, L Gram
Applied and environmental microbiology 79 (9), 2944-2951, 2013
1182013
Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera
O Lukjancenko, DW Ussery, TM Wassenaar
Microbial ecology 63 (3), 651-673, 2012
1092012
Genomic variation in Salmonella enterica core genes for epidemiological typing
P Leekitcharoenphon, O Lukjancenko, C Friis, FM Aarestrup, DW Ussery
BMC genomics 13 (1), 1-12, 2012
932012
Evaluation of methods for the concentration and extraction of viruses from sewage in the context of metagenomic sequencing
MH Hjelmsø, M Hellmér, X Fernandez-Cassi, N Timoneda, ...
PloS one 12 (1), e0170199, 2017
762017
Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition
BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Priemé, ...
MSystems 1 (5), e00095-16, 2016
762016
Genomic signature of multidrug-resistant Salmonella enterica serovar Typhi isolates related to a massive outbreak in Zambia between 2010 and 2012
RS Hendriksen, P Leekitcharoenphon, O Lukjancenko, ...
Journal of clinical microbiology 53 (1), 262-272, 2015
742015
MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads
TN Petersen, O Lukjancenko, MCF Thomsen, M Maddalena Sperotto, ...
PloS one 12 (5), e0176469, 2017
642017
A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds
P Munk, VD Andersen, L de Knegt, MS Jensen, BE Knudsen, ...
Journal of Antimicrobial Chemotherapy 72 (2), 385-392, 2017
582017
Veillonella, firmicutes: microbes disguised as gram negatives
T Vesth, A Ozen, SC Andersen, RS Kaas, O Lukjancenko, J Bohlin, ...
Standards in genomic sciences 9 (2), 431-448, 2013
442013
Quality scores for 32,000 genomes
ML Land, D Hyatt, SR Jun, GH Kora, LJ Hauser, O Lukjancenko, ...
Standards in genomic sciences 9 (1), 1-10, 2014
432014
Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease
KG Joensen, ALØ Engsbro, O Lukjancenko, RS Kaas, O Lund, H Westh, ...
European Journal of Clinical Microbiology & Infectious Diseases 36 (7), 1325 …, 2017
322017
Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?
L Roer, RS Hendriksen, P Leekitcharoenphon, O Lukjancenko, RS Kaas, ...
Msystems 1 (3), e00009-16, 2016
31*2016
Bifidobacterium breve Bif195 protects against small-intestinal damage caused by acetylsalicylic acid in healthy volunteers
B Mortensen, C Murphy, J O’Grady, M Lucey, G Elsafi, L Barry, ...
Gastroenterology 157 (3), 637-646. e4, 2019
252019
Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition. mSystems 1: e00095-16
BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Prieme, ...
222016
PanFunPro: PAN-genome analysis based on FUNctional PROfiles
O Lukjancenko, MC Thomsen, MV Larsen, DW Ussery
F1000Research 2 (265), 265, 2013
212013
Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania
HH Kumburu, T Sonda, M van Zwetselaar, P Leekitcharoenphon, ...
Journal of Antimicrobial Chemotherapy 74 (6), 1484-1493, 2019
202019
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