Aleksei Aksimentiev
Aleksei Aksimentiev
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Cited by
Cited by
Scalable molecular dynamics on CPU and GPU architectures with NAMD
JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ...
The Journal of chemical physics 153 (4), 044130, 2020
Imaging α-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map
A Aksimentiev, K Schulten
Biophysical journal 88 (6), 3745-3761, 2005
Microscopic kinetics of DNA translocation through synthetic nanopores
A Aksimentiev, JB Heng, G Timp, K Schulten
Biophysical journal 87 (3), 2086-2097, 2004
Sizing DNA using a nanometer-diameter pore
JB Heng, C Ho, T Kim, R Timp, A Aksimentiev, YV Grinkova, S Sligar, ...
Biophysical journal 87 (4), 2905-2911, 2004
Orientation discrimination of single-stranded DNA inside the α-hemolysin membrane channel
J Mathé, A Aksimentiev, DR Nelson, K Schulten, A Meller
Proceedings of the National Academy of Sciences 102 (35), 12377-12382, 2005
Slowing down DNA translocation through a nanopore in lithium chloride
SW Kowalczyk, DB Wells, A Aksimentiev, C Dekker
Nano letters 12 (2), 1038-1044, 2012
Water− silica force field for simulating nanodevices
ER Cruz-Chu, A Aksimentiev, K Schulten
The Journal of Physical Chemistry B 110 (43), 21497-21508, 2006
Assessing graphene nanopores for sequencing DNA
DB Wells, M Belkin, J Comer, A Aksimentiev
Nano letters 12 (8), 4117-4123, 2012
Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems
J Yoo, A Aksimentiev
The journal of physical chemistry letters 3 (1), 45-50, 2012
The electromechanics of DNA in a synthetic nanopore
JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ...
Biophysical journal 90 (3), 1098-1106, 2006
Simulation of the electric response of DNA translocation through a semiconductor nanopore–capacitor
ME Gracheva, A Xiong, A Aksimentiev, K Schulten, G Timp, JP Leburton
Nanotechnology 17 (3), 622, 2006
Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore
H Ouldali, K Sarthak, T Ensslen, F Piguet, P Manivet, J Pelta, ...
Nature biotechnology 38 (2), 176-181, 2020
Stretching DNA using the electric field in a synthetic nanopore
JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ...
Nano letters 5 (10), 1883-1888, 2005
Detection of DNA sequences using an alternating electric field in a nanopore capacitor
G Sigalov, J Comer, G Timp, A Aksimentiev
Nano letters 8 (1), 56-63, 2008
Modeling and simulation of ion channels
C Maffeo, S Bhattacharya, J Yoo, D Wells, A Aksimentiev
Chemical reviews 112 (12), 6250-6284, 2012
Deciphering ionic current signatures of DNA transport through a nanopore
A Aksimentiev
Nanoscale 2 (4), 468-483, 2010
Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability
TTM Ngo, J Yoo, Q Dai, Q Zhang, C He, A Aksimentiev, T Ha
Nature communications 7 (1), 10813, 2016
Electro-osmotic screening of the DNA charge in a nanopore
B Luan, A Aksimentiev
Physical Review E 78 (2), 021912, 2008
Insights into the molecular mechanism of rotation in the Fo sector of ATP synthase
A Aksimentiev, IA Balabin, RH Fillingame, K Schulten
Biophysical journal 86 (3), 1332-1344, 2004
In situ structure and dynamics of DNA origami determined through molecular dynamics simulations
J Yoo, A Aksimentiev
Proceedings of the National Academy of Sciences 110 (50), 20099-20104, 2013
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