| Scalable molecular dynamics on CPU and GPU architectures with NAMD JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ... The Journal of chemical physics 153 (4), 044130, 2020 | 1007 | 2020 |
| Imaging α-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map A Aksimentiev, K Schulten Biophysical journal 88 (6), 3745-3761, 2005 | 705 | 2005 |
| Microscopic kinetics of DNA translocation through synthetic nanopores A Aksimentiev, JB Heng, G Timp, K Schulten Biophysical journal 87 (3), 2086-2097, 2004 | 441 | 2004 |
| Sizing DNA using a nanometer-diameter pore JB Heng, C Ho, T Kim, R Timp, A Aksimentiev, YV Grinkova, S Sligar, ... Biophysical journal 87 (4), 2905-2911, 2004 | 427 | 2004 |
| Orientation discrimination of single-stranded DNA inside the α-hemolysin membrane channel J Mathé, A Aksimentiev, DR Nelson, K Schulten, A Meller Proceedings of the National Academy of Sciences 102 (35), 12377-12382, 2005 | 408 | 2005 |
| Slowing down DNA translocation through a nanopore in lithium chloride SW Kowalczyk, DB Wells, A Aksimentiev, C Dekker Nano letters 12 (2), 1038-1044, 2012 | 396 | 2012 |
| Water− silica force field for simulating nanodevices ER Cruz-Chu, A Aksimentiev, K Schulten The Journal of Physical Chemistry B 110 (43), 21497-21508, 2006 | 366 | 2006 |
| Assessing graphene nanopores for sequencing DNA DB Wells, M Belkin, J Comer, A Aksimentiev Nano letters 12 (8), 4117-4123, 2012 | 297 | 2012 |
| Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems J Yoo, A Aksimentiev The journal of physical chemistry letters 3 (1), 45-50, 2012 | 294 | 2012 |
| The electromechanics of DNA in a synthetic nanopore JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ... Biophysical journal 90 (3), 1098-1106, 2006 | 275 | 2006 |
| Simulation of the electric response of DNA translocation through a semiconductor nanopore–capacitor ME Gracheva, A Xiong, A Aksimentiev, K Schulten, G Timp, JP Leburton Nanotechnology 17 (3), 622, 2006 | 254 | 2006 |
| Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore H Ouldali, K Sarthak, T Ensslen, F Piguet, P Manivet, J Pelta, ... Nature biotechnology 38 (2), 176-181, 2020 | 238 | 2020 |
| Stretching DNA using the electric field in a synthetic nanopore JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ... Nano letters 5 (10), 1883-1888, 2005 | 238 | 2005 |
| Detection of DNA sequences using an alternating electric field in a nanopore capacitor G Sigalov, J Comer, G Timp, A Aksimentiev Nano letters 8 (1), 56-63, 2008 | 221 | 2008 |
| Modeling and simulation of ion channels C Maffeo, S Bhattacharya, J Yoo, D Wells, A Aksimentiev Chemical reviews 112 (12), 6250-6284, 2012 | 200 | 2012 |
| Deciphering ionic current signatures of DNA transport through a nanopore A Aksimentiev Nanoscale 2 (4), 468-483, 2010 | 189 | 2010 |
| Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability TTM Ngo, J Yoo, Q Dai, Q Zhang, C He, A Aksimentiev, T Ha Nature communications 7 (1), 10813, 2016 | 183 | 2016 |
| Electro-osmotic screening of the DNA charge in a nanopore B Luan, A Aksimentiev Physical Review E 78 (2), 021912, 2008 | 167 | 2008 |
| Insights into the molecular mechanism of rotation in the Fo sector of ATP synthase A Aksimentiev, IA Balabin, RH Fillingame, K Schulten Biophysical journal 86 (3), 1332-1344, 2004 | 167 | 2004 |
| In situ structure and dynamics of DNA origami determined through molecular dynamics simulations J Yoo, A Aksimentiev Proceedings of the National Academy of Sciences 110 (50), 20099-20104, 2013 | 164 | 2013 |
