SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation W Shen, S Le, Y Li, F Hu PloS one 11 (10), e0163962, 2016 | 1679 | 2016 |
TaxonKit: A practical and efficient NCBI taxonomy toolkit W Shen, H Ren Journal of genetics and genomics 48 (9), 844-850, 2021 | 208 | 2021 |
Anti-obesity effect of capsaicin in mice fed with high-fat diet is associated with an increase in population of the gut bacterium Akkermansia muciniphila W Shen, M Shen, X Zhao, H Zhu, Y Yang, S Lu, Y Tan, G Li, M Li, J Wang, ... Frontiers in Microbiology 8, 235091, 2017 | 143 | 2017 |
Development of a Bacteriophage Cocktail to Constrain the Emergence of Phage-Resistant Pseudomonas aeruginosa Y Yang, W Shen, Q Zhong, Q Chen, X He, JL Baker, K Xiong, X Jin, ... Frontiers in microbiology 11, 327, 2020 | 123 | 2020 |
Antibacterial properties of Acinetobacter baumanniiphage Abp1 endolysin (PlyAB1) G Huang, X Shen, Y Gong, Z Dong, X Zhao, W Shen, J Wang, F Hu, ... BMC infectious diseases 14, 1-8, 2014 | 60 | 2014 |
Characterization of the first double-stranded RNA bacteriophage infecting Pseudomonas aeruginosa Y Yang, S Lu, W Shen, X Zhao, M Shen, Y Tan, G Li, M Li, J Wang, F Hu, ... Scientific reports 6 (1), 38795, 2016 | 58 | 2016 |
Pseudomonas aeruginosa MutL promotes large chromosomal deletions through non-homologous end joining to prevent bacteriophage predation M Shen, H Zhang, W Shen, Z Zou, S Lu, G Li, X He, M Agnello, W Shi, ... Nucleic acids research 46 (9), 4505-4514, 2018 | 57 | 2018 |
Global Transcriptomic Analysis of Interactions between Pseudomonas aeruginosa and Bacteriophage PaP3 X Zhao, C Chen, W Shen, G Huang, S Le, S Lu, M Li, Y Zhao, J Wang, ... Scientific Reports 6 (1), 19237, 2016 | 54 | 2016 |
Identification and characterization of the HicAB toxin-antitoxin system in the opportunistic pathogen Pseudomonas aeruginosa G Li, M Shen, S Lu, S Le, Y Tan, J Wang, X Zhao, W Shen, K Guo, Y Yang, ... Toxins 8 (4), 113, 2016 | 48 | 2016 |
Safety and antibody response to inactivated COVID‐19 vaccine in patients with chronic hepatitis B virus infection T He, Y Zhou, P Xu, N Ling, M Chen, T Huang, B Zhang, Z Yang, L Ao, ... Liver International 42 (6), 1287-1296, 2022 | 46 | 2022 |
Transcriptomic and Metabolomics Profiling of Phage–Host Interactions between Phage PaP1 and Pseudomonas aeruginosa X Zhao, M Shen, X Jiang, W Shen, Q Zhong, Y Yang, Y Tan, M Agnello, ... Frontiers in microbiology 8, 548, 2017 | 38 | 2017 |
A linear plasmid-like prophage of Actinomyces odontolyticus promotes biofilm assembly M Shen, Y Yang, W Shen, L Cen, JS McLean, W Shi, S Le, X He Applied and Environmental Microbiology 84 (17), e01263-18, 2018 | 28 | 2018 |
MicroRNA prediction using a fixed-order Markov model based on the secondary structure pattern W Shen, M Chen, G Wei, Y Li PloS one 7 (10), e48236, 2012 | 26 | 2012 |
Characterization and Comparative Genomic Analyses of Pseudomonas aeruginosa Phage PaoP5: New Members Assigned to PAK_P1-like Viruses M Shen, S Le, X Jin, G Li, Y Tan, M Li, X Zhao, W Shen, Y Yang, J Wang, ... Scientific Reports 6 (1), 34067, 2016 | 25 | 2016 |
Genomic analyses of multidrug resistant Pseudomonas aeruginosa PA1 resequenced by single-molecule real-time sequencing G Li, M Shen, S Le, Y Tan, M Li, X Zhao, W Shen, Y Yang, J Wang, H Zhu, ... Bioscience reports 36 (6), e00418, 2016 | 22 | 2016 |
Complete genome sequence of Pseudomonas aeruginosa PA1, isolated from a patient with a respiratory tract infection S Lu, S Le, G Li, M Shen, Y Tan, X Zhao, J Wang, W Shen, K Guo, Y Yang, ... Genome Announcements 3 (6), 10.1128/genomea. 01453-15, 2015 | 19 | 2015 |
Transcriptomic and Metabolomic Analysis Revealed Multifaceted Effects of Phage Protein Gp70.1 on Pseudomonas aeruginosa X Zhao, C Chen, X Jiang, W Shen, G Huang, S Le, S Lu, L Zou, Q Ni, M Li, ... Frontiers in microbiology 7, 1519, 2016 | 17 | 2016 |
KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping W Shen, H Xiang, T Huang, H Tang, M Peng, D Cai, P Hu, H Ren Bioinformatics 39 (1), btac845, 2023 | 16 | 2023 |
A novel algorithm for detecting multiple covariance and clustering of biological sequences W Shen, Y Li Scientific Reports 6 (30425), 2016 | 16 | 2016 |
Genome of Helicobacter pylori Strain XZ274, an Isolate from a Tibetan Patient with Gastric Cancer in China Y Guo, H Wang, Y Li, Y Song, C Chen, Y Liao, L Ren, C Guo, W Tong, ... Journal of bacteriology 194 (15), 4146-4147, 2012 | 15 | 2012 |