Annika Jacobsen
Annika Jacobsen
BioSemantics Group, Human Genetics, Leiden University Medical Center
Verified email at
Cited by
Cited by
The Salmonella enterica pan-genome
A Jacobsen, RS Hendriksen, FM Aaresturp, DW Ussery, C Friis
Microbial ecology 62 (3), 487-504, 2011
FAIR principles: interpretations and implementation considerations
A Jacobsen, R de Miranda Azevedo, N Juty, D Batista, S Coles, R Cornet, ...
Data Intelligence 2 (1-2), 10-29, 2020
Recommendations for improving the quality of rare disease registries
Y Kodra, J Weinbach, M Posada-De-La-Paz, A Coi, SL Lemonnier, ...
International Journal of Environmental Research and Public Health 15 (8), 1644, 2018
A generic workflow for the data FAIRification process
A Jacobsen, R Kaliyaperumal, LOB da Silva Santos, B Mons, E Schultes, ...
Data Intelligence 2 (1-2), 56-65, 2020
Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer
A Jacobsen, LJW Bosch, SR Martens-de Kemp, B Carvalho, ...
Scientific reports 8 (1), 1-11, 2018
MECP2 variation in Rett syndrome—An overview of current coverage of genetic and phenotype data within existing databases
GS Townend, F Ehrhart, HJ van Kranen, M Wilkinson, A Jacobsen, ...
Human mutation 39 (7), 914-924, 2018
Construction and experimental validation of a Petri net model of Wnt/β-catenin signaling
A Jacobsen, N Heijmans, F Verkaar, MJ Smit, J Heringa, ...
PLoS One 11 (5), e0155743, 2016
FAIR convergence matrix: Optimizing the reuse of existing FAIR-related resources
HP Sustkova, KM Hettne, P Wittenburg, A Jacobsen, T Kuhn, R Pergl, ...
Data Intelligence 2 (1-2), 158-170, 2020
Highlights from the tenth ISCB Student Council Symposium 2014
F Rahman, K Wilkins, A Jacobsen, A Junge, E Vicedo, D Deblasio, ...
BMC Bioinformatics 16, doi:10.1186/1471-2105-16-S2-A1, 2015
BioASF: a framework for automatically generating executable pathway models specified in BioPAX
R Haydarlou, A Jacobsen, N Bonzanni, KA Feenstra, S Abeln, J Heringa
Bioinformatics 32 (12), i60-i69, 2016
The FAIR principles: first generation implementation choices and challenges
B Mons, E Schultes, F Liu, A Jacobsen
Data Intelligence 2 (1-2), 1-9, 2020
The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data
P Wittenburg, HP Sustkova, A Montesanti, SM Bloemers, SH de Waard, ...
arXiv preprint arXiv:1902.11162, 2019
Highlights from the ISCB student council symposia in 2016
B Cuypers, A Jacobsen, B Siranosian, K Schwahn, AM Conard, N Aben, ...
F1000Research 5, 2016
The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic …
S Amini, A Jacobsen, O Ivanova, P Lijnzaad, J Heringa, FCP Holstege, ...
PLoS computational biology 15 (5), e1007061, 2019
Semantic modelling of Common Data Elements for Rare Disease registries, and a prototype workflow for their deployment over registry data
R Kaliyaperumal, MD Wilkinson, PA Moreno, N Benis, R Cornet, ...
medRxiv, 2021
De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data
MG Kersloot, A Jacobsen, KHJ Groenen, B dos Santos Vieira, ...
medRxiv, 2021
The de novo FAIRification process of a registry for vascular anomalies
KHJ Groenen, A Jacobsen, MG Kersloot, B dos Santos Vieira, ...
Orphanet journal of rare diseases 16 (1), 1-10, 2021
A catalogue of 863 Rett-syndrome-causing MECP2 mutations and lessons learned from data integration
F Ehrhart, A Jacobsen, M Rigau, M Bosio, R Kaliyaperumal, JFJ Laros, ...
Scientific data 8 (1), 1-12, 2021
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic
N Queralt-Rosinach, R Kaliyaperumal, CH Bernabé, Q Long, SA Joosten, ...
medRxiv, 2021
863 different causes of Rett syndrome and lessons learned from data integration.
F Ehrhart, A Jacobsen, M Rigau, M Bosio, R Kaliyaperumal, J Laros, ...
Authorea Preprints, 2020
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