Xin Gao

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Yu Li (李煜)Assistant Professor, Computer Science & Engineering, Chinese University of Hong KongVerified email at cse.cuhk.edu.hk
hiroyuki kuwaharaResearch Scientist at KAUSTVerified email at kaust.edu.sa
Jing-Yan WangResearch Scientist, New York UniversityVerified email at nyu.edu
Ming FanHangzhou Dianzi UniversityVerified email at hdu.edu.cn
Sheng WangZelixir BiotechVerified email at zelixir.com
Ramzan UmarovPostdoctoral researcher, RIKENVerified email at riken.jp
Robert HoehndorfKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Xuhui HuangHirschfelder Chair in Theoretical Chemistry, University of Wisconsin-Madison (previously at HKUST)Verified email at chem.wisc.edu
Abdul-Hamid EmwasKAUSTVerified email at kaust.edu.sa
Meshari AlazmiAssistant Professor, University of Ha'ilVerified email at kaust.edu.sa
Fatima Zohra SmailiMcGill UniversityVerified email at mail.mcgill.ca
Juexiao ZhouKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Xiangliang ZhangAssociate Professor, University of Notre DameVerified email at nd.edu
Stefan AroldProfessor of Bioscience at King Abdullah University of Science and Technology (KAUST)Verified email at kaust.edu.sa
Renmin Han (韩仁敏)Research Center for Mathematics and Interdisciplinary Sciences, Shandong UniversityVerified email at sdu.edu.cn
Somayah AlbaradeiPhDVerified email at kaust.edu.sa
Lizhong Ding (丁立中)Inception Institute of Artificial Intelligence (IIAI), Abu Dhabi, UAEVerified email at inceptioniai.org
Peng YangMetaVerified email at fb.com
Haoyang LiKing Abdullah University of Science and TechnologyVerified email at kaust.edu.sa
Xuefeng CuiProfessor at Shandong UniversityVerified email at email.sdu.edu.cn

Xin Gao

Professor, Computer Sciences; Associate Director, Computational Bioscience Research Center

Verified email at kaust.edu.sa - Homepage

Bioinformatics computational biology machine learning


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Deep learning in bioinformatics: Introduction, application, and perspective in the big data era Y Li, C Huang, L Ding, Z Li, Y Pan, X Gao Methods 166, 4-21, 2019	245	2019
DEEPre: sequence-based enzyme EC number prediction by deep learning Y Li, S Wang, R Umarov, B Xie, M Fan, L Li, X Gao Bioinformatics, btx680, 2017	202	2017
Bioinformatics clouds for big data manipulation L Dai, X Gao, Y Guo, J Xiao, Z Zhang Biology direct 7 (1), 43, 2012	187	2012
A Rapid, Accurate and Machine-Agnostic Segmentation and Quantification Method for CT-Based COVID-19 Diagnosis L Zhou, Z Li, J Zhou, H Li, Y Chen, Y Huang, D Xie, L Zhao, M Fan, ... IEEE Transactions on Medical Imaging 39 (8), 2638-2652, 2020	154	2020
Non-negative matrix factorization by maximizing correntropy for cancer clustering JJY Wang, X Wang, X Gao BMC bioinformatics 14 (1), 1-11, 2013	136	2013
Recommendations and standardization of biomarker quantification using NMR-based metabolomics with particular focus on urinary analysis AH Emwas, R Roy, RT McKay, D Ryan, L Brennan, L Tenori, C Luchinat, ... Journal of proteome research 15 (2), 360-373, 2016	130	2016
Learning from weak and noisy labels for semantic segmentation Z Lu, Z Fu, T Xiang, P Han, L Wang, X Gao IEEE transactions on pattern analysis and machine intelligence 39 (3), 486-500, 2017	123	2017
Multiple graph regularized nonnegative matrix factorization JJY Wang, H Bensmail, X Gao Pattern Recognition 46 (10), 2840-2847, 2013	119	2013
Opa2vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction FZ Smaili, X Gao, R Hoehndorf Bioinformatics 35 (12), 2133-2140, 2019	118	2019
Recommended strategies for spectral processing and post-processing of 1D ¹H-NMR data of biofluids with a particular focus on urine AH Emwas, E Saccenti, X Gao, RT McKay, VAPM Dos Santos, R Roy, ... Metabolomics 14, 1-23, 2018	112	2018
GCN-MF: Disease-Gene Association Identification By Graph Convolutional Networks and Matrix Factorization P Han, P Yang, P Zhao, S Shang, Y Liu, J Zhou, X Gao, P Kalnis Proceedings of the 25th ACM SIGKDD International Conference on Knowledge …, 2019	109	2019
Onto2vec: joint vector-based representation of biological entities and their ontology-based annotations FZ Smaili, X Gao, R Hoehndorf Bioinformatics 34 (13), i52-i60, 2018	101	2018
Semantic similarity and machine learning with ontologies M Kulmanov, FZ Smaili, X Gao, R Hoehndorf Briefings in Bioinformatics, 2020	86	2020
DeepSimulator: a deep simulator for Nanopore sequencing Y Li, R Han, C Bi, M Li, S Wang, X Gao Bioinformatics 34 (17), 2899-2908, 2018	85	2018
Bridge helix bending promotes RNA polymerase II backtracking through a critical and conserved threonine residue LT Da, F Pardo-Avila, L Xu, DA Silva, L Zhang, X Gao, D Wang, X Huang Nature communications 7 (1), 11244, 2016	81	2016
mlDEEPre: Multi-functional enzyme function prediction with hierarchical multi-label deep learning Z Zou, S Tian, X Gao, Y Li Frontiers in Genetics 9, 714, 2018	80	2018
PICKY: a novel SVD-based NMR spectra peak picking method B Alipanahi, X Gao, E Karakoc, L Donaldson, M Li Bioinformatics 25 (12), i268, 2009	79	2009
Promoter analysis and prediction in the human genome using sequence-based deep learning models R Umarov, H Kuwahara, Y Li, X Gao, V Solovyev Bioinformatics 35 (16), 2730-2737, 2019	76	2019
Hologenome analysis of two marine sponges with different microbiomes T Ryu, L Seridi, L Moitinho-Silva, M Oates, YJ Liew, C Mavromatis, ... BMC genomics 17, 1-11, 2016	67	2016
DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques MA Thafar, RS Olayan, H Ashoor, S Albaradei, VB Bajic, X Gao, ... Journal of Cheminformatics 12 (1), 1-17, 2020	66	2020

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