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Daniel E. Cook
Daniel E. Cook
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Title
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Cited by
Year
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
6122023
CeNDR, the Caenorhabditis elegans natural diversity resource
DE Cook, S Zdraljevic, JP Roberts, EC Andersen
Nucleic acids research 45 (D1), D650-D657, 2017
3522017
Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA
C Abbosh, AM Frankell, T Harrison, J Kisistok, A Garnett, L Johnson, ...
Nature 616 (7957), 553-562, 2023
1742023
The evolution of lung cancer and impact of subclonal selection in TRACERx
AM Frankell, M Dietzen, M Al Bakir, EL Lim, T Karasaki, S Ward, ...
Nature 616 (7957), 525-533, 2023
1682023
Antibodies against endogenous retroviruses promote lung cancer immunotherapy
KW Ng, J Boumelha, KSS Enfield, J Almagro, H Cha, O Pich, T Karasaki, ...
Nature 616 (7957), 563-573, 2023
1532023
VCF-kit: assorted utilities for the variant call format
DE Cook, EC Andersen
Bioinformatics 33 (10), 1581-1582, 2017
1402017
The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length
DE Cook, S Zdraljevic, RE Tanny, B Seo, DD Riccardi, LM Noble, ...
Genetics 204 (1), 371-383, 2016
1402016
Balancing selection maintains hyper-divergent haplotypes in Caenorhabditis elegans
D Lee, S Zdraljevic, L Stevens, Y Wang, RE Tanny, TA Crombie, DE Cook, ...
Nature ecology & evolution 5 (6), 794-807, 2021
129*2021
DeepConsensus improves the accuracy of sequences with a gap-aware sequence transformer
G Baid, DE Cook, K Shafin, T Yun, F Llinares-López, Q Berthet, ...
Nature Biotechnology 41 (2), 232-238, 2023
122*2023
Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations
TA Crombie, S Zdraljevic, DE Cook, RE Tanny, SC Brady, Y Wang, ...
eLife 8, 2019
1172019
Genomic–transcriptomic evolution in lung cancer and metastasis
C Martínez-Ruiz, JRM Black, C Puttick, MS Hill, J Demeulemeester, ...
Nature 616 (7957), 543-552, 2023
1152023
The evolution of non-small cell lung cancer metastases in TRACERx
M Al Bakir, A Huebner, C Martínez-Ruiz, K Grigoriadis, TBK Watkins, ...
Nature 616 (7957), 534-542, 2023
1132023
DYRK1A controls the transition from proliferation to quiescence during lymphoid development by destabilizing Cyclin D3
BJ Thompson, R Bhansali, L Diebold, DE Cook, L Stolzenburg, ...
Journal of Experimental Medicine 212 (6), 953-970, 2015
932015
Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species
KM Laricchia, S Zdraljevic, DE Cook, EC Andersen
Molecular biology and evolution 34 (9), 2187-2202, 2017
772017
Discovery of genomic intervals that underlie nematode responses to benzimidazoles
M Zamanian, DE Cook, S Zdraljevic, SC Brady, D Lee, J Lee, ...
PLoS Neglected Tropical Diseases 12 (3), e0006368, 2018
762018
Clinical and environmental influences on metabolic biomarkers collected for newborn screening
KK Ryckman, SL Berberich, OA Shchelochkov, DE Cook, JC Murray
Clinical biochemistry 46 (1-2), 133-138, 2013
762013
Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons
S Zdraljevic, C Strand, HS Seidel, DE Cook, JG Doench, EC Andersen
PLoS genetics 13 (7), e1006891, 2017
722017
Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans
C Kim, J Kim, S Kim, DE Cook, KS Evans, EC Andersen, J Lee
Genome research 29 (6), 1023-1035, 2019
662019
The complete sequence and comparative analysis of ape sex chromosomes
KD Makova, BD Pickett, RS Harris, GA Hartley, M Cechova, K Pal, S Nurk, ...
Nature, 1-11, 2024
522024
Selection and gene flow shape niche-associated variation in pheromone response
D Lee, S Zdraljevic, DE Cook, L Frézal, JC Hsu, MG Sterken, JAG Riksen, ...
Nature Ecology & Evolution 3 (10), 1455-1463, 2019
452019
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Articles 1–20