Ernesto Aparicio-Puerta
Ernesto Aparicio-Puerta
Postdoc researcher
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Cited by
Cited by
MirGeneDB 2.0: the metazoan microRNA complement
B Fromm, D Domanska, E Hřye, V Ovchinnikov, W Kang, ...
Nucleic Acids Research, 258749, 2019
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression
E Aparicio-Puerta, R Lebrón, A Rueda, C Gómez-Martín, S Giannoukakos, ...
Nucleic acids research 47 (W1), W530-W535, 2019
miRTargetLink 2.0—interactive miRNA target gene and target pathway networks
F Kern †, E Aparicio-Puerta †, Y Li †, T Fehlmann, T Kehl, V Wagner, ...
Nucleic Acids Research, 2021
Functional Enrichment Analysis of Regulatory Elements
A Garcia-Moreno, R López-Domínguez, JA Villatoro-García, ...
Biomedicines 10 (3), 590, 2022
MirGeneDB 2.1: toward a complete sampling of all major animal phyla
B Fromm, E Hřye, D Domanska, X Zhong, E Aparicio-Puerta, ...
Nucleic acids research 50 (D1), D204-D210, 2022
Validation of human microRNA target pathways enables evaluation of target prediction tools
F Kern, L Krammes, K Danz, C Diener, T Kehl, O Küchler, T Fehlmann, ...
Nucleic acids research 49 (1), 127-144, 2021
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API
T Desvignes, P Loher, K Eilbeck, J Ma, G Urgese, B Fromm, J Sydes, ...
Bioinformatics, 505222, 2019
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms
E Aparicio-Puerta*, C Gómez-Martín, S Giannoukakos, JM Medina, ...
Nucleic Acids Research, 2022
mirnaQC: a webserver for comparative quality control of miRNA-seq data
E Aparicio-Puerta, C Gómez-Martín, S Giannoukakos, JM Medina, ...
Nucleic Acids Research 48 (W1), W262-W267, 2020
Extracellular vesicle miRNA predict FDG‐PET status in patients with classical Hodgkin Lymphoma
EEE Drees, MGM Roemer, NJ Groenewegen, J Perez‐Boza, ...
Journal of Extracellular Vesicles 10 (9), e12121, 2021
liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies
E Aparicio-Puerta, D Jáspez, R Lebrón, D Koppers-Lalic, JA Marchal, ...
Nucleic acids research 47 (D1), D113-D120, 2019
ALL-tRNAseq enables robust tRNA profiling in tissue samples
C Scheepbouwer, E Aparicio-Puerta, C Gomez-Martin, H Verschueren, ...
Genes & Development, 2023
isomiRdb: microRNA expression at isoform resolution
E Aparicio-Puerta*, P Hirsch, GP Schmartz, T Fehlmann, V Keller, A Engel, ...
Nucleic Acids Research 51 (D1), D179-D185, 2023
MicroRNA-4732-3p Is Dysregulated in Breast Cancer Patients with Cardiotoxicity, and Its Therapeutic Delivery Protects the Heart from Doxorubicin-Induced Oxidative Stress in Rats
R Sánchez-Sánchez, I Reinal, E Peiró-Molina, M Buigues, S Tejedor, ...
Antioxidants 11 (10), 1955, 2022
Transcriptomic analysis of the tick midgut and salivary gland responses upon repeated blood-feeding on a vertebrate host
JM Medina, MA Jmel, B Cuveele, C Gómez-Martín, E Aparicio-Puerta, ...
Frontiers in Cellular and Infection Microbiology 12, 919786, 2022
Quantitative proteomics analysis reveals core and variable tick salivary proteins at the tick‐vertebrate host interface
C Bensaoud, S Tenzer, A Poplawski, JM Medina, MA Jmel, H Voet, ...
Molecular Ecology 31 (15), 4162-4175, 2022
Reassessment of miRNA variant (isomiRs) composition by small RNA sequencing
C Gómez-Martín, E Aparicio-Puerta, MAJ van Eijndhoven, JM Medina, ...
Cell Reports Methods 3 (5), 2023
miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations
E Aparicio-Puerta, P Hirsch, GP Schmartz, F Kern, T Fehlmann, A Keller
Nucleic Acids Research, gkad392, 2023
Comprehensive, integrative genomic analysis of microRNA expression profiles in different tissues of two wheat cultivars with different traits
C Gómez-Martín, H Zhou, JM Medina, E Aparicio-Puerta, M Hackenberg, ...
Functional & Integrative Genomics 23 (1), 15, 2023
Genome-Wide Analysis of microRNA Expression Profile in Roots and Leaves of Three Wheat Cultivars under Water and Drought Conditions
C Gómez-Martín, H Zhou, JM Medina, E Aparicio-Puerta, B Shi, ...
Biomolecules 13 (3), 440, 2023
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