Distinct domestication trajectories in top-fermenting beer yeasts and wine yeasts M Gonçalves, A Pontes, P Almeida, R Barbosa, M Serra, D Libkind, ... Current Biology 26 (20), 2750-2761, 2016 | 226 | 2016 |
A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum P Almeida, C Gonçalves, S Teixeira, D Libkind, M Bontrager, ... Nature communications 5 (1), 1-12, 2014 | 219 | 2014 |
A population genomics insight into the Mediterranean origins of wine yeast domestication P Almeida, R Barbosa, P Zalar, Y Imanishi, K Shimizu, B Turchetti, ... Molecular ecology 24 (21), 5412-5427, 2015 | 177 | 2015 |
Sex chromosome evolution: So many exceptions to the rules BLS Furman, DCH Metzger, I Darolti, AE Wright, BA Sandkam, P Almeida, ... Genome Biology and Evolution 12 (6), 750-763, 2020 | 169 | 2020 |
Whole-genome resequencing reveals signatures of selection and timing of duck domestication Z Zhang, Y Jia, P Almeida, JE Mank, M van Tuinen, Q Wang, Z Jiang, ... GigaScience 7 (4), giy027, 2018 | 99 | 2018 |
Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species RW Nowell, P Almeida, CG Wilson, TP Smith, D Fontaneto, A Crisp, ... PLoS biology 16 (4), e2004830, 2018 | 87 | 2018 |
Local climatic adaptation in a widespread microorganism JB Leducq, G Charron, P Samani, AK Dubé, K Sylvester, B James, ... Proceedings of the Royal Society B: Biological Sciences 281 (1777), 20132472, 2014 | 85 | 2014 |
Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae R Barbosa, P Almeida, SVB Safar, RO Santos, PB Morais, ... Genome Biology and Evolution 8 (2), 317-329, 2016 | 79 | 2016 |
Single-molecule genome assembly of the Basket Willow, Salix viminalis, reveals earliest stages of sex chromosome expansion P Almeida, E Proux-Wera, A Churcher, L Soler, J Dainat, P Pucholt, ... bioRxiv, 589804, 2019 | 62* | 2019 |
Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion P Almeida, E Proux-Wera, A Churcher, L Soler, J Dainat, P Pucholt, ... BMC biology 18 (1), 1-18, 2020 | 53 | 2020 |
Adaptive divergence in wine yeasts and their wild relatives suggests a prominent role for introgressions and rapid evolution at noncoding sites P Almeida, R Barbosa, D Bensasson, P Gonçalves, JP Sampaio Molecular ecology 26 (7), 2167-2182, 2017 | 49 | 2017 |
Extreme Y chromosome polymorphism corresponds to five male reproductive morphs of a freshwater fish BA Sandkam, P Almeida, I Darolti, BLS Furman, W van der Bijl, J Morris, ... Nature Ecology & Evolution, 1-10, 2021 | 31 | 2021 |
Genome-Wide Single-Nucleotide Polymorphism Data Unveil Admixture of Chinese Indigenous Chicken Breeds with Commercial Breeds C Nie, P Almeida, Y Jia, H Bao, Z Ning, L Qu Genome biology and evolution 11 (7), 1847-1856, 2019 | 31 | 2019 |
Divergence and remarkable diversity of the Y chromosome in guppies P Almeida, BA Sandkam, J Morris, I Darolti, F Breden, JE Mank Molecular Biology and Evolution 38 (2), 619-633, 2021 | 30 | 2021 |
Yeasts vectored by migratory birds collected in the Mediterranean island of Ustica and description of Phaffomyces usticensis f.a. sp. nov., a new species related to … N Francesca, C Carvalho, C Sannino, MA Guerreiro, PM Almeida, ... FEMS yeast research 14 (6), 910-921, 2014 | 30 | 2014 |
Evolutionary dynamics of transposable elements in bdelloid rotifers RW Nowell, CG Wilson, P Almeida, PH Schiffer, D Fontaneto, L Becks, ... Elife 10, e63194, 2021 | 27 | 2021 |
Wickerhamomyces sylviae fa, sp. nov., an ascomycetous yeast species isolated from migratory birds N Francesca, C Carvalho, PM Almeida, C Sannino, L Settanni, ... International Journal of Systematic and Evolutionary Microbiology 63 (12 …, 2013 | 22 | 2013 |
A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum. Nat. Commun. 5: 4044 P Almeida, C Gonçalves, S Teixeira, D Libkind, M Bontrager, ... | 14 | 2014 |
Gene duplication to the Y chromosome in Trinidadian Guppies Y Lin, I Darolti, BLS Furman, P Almeida, BA Sandkam, F Breden, ... bioRxiv, 2021.02. 16.431319, 2021 | 8 | 2021 |
Population Size, Sex and Purifying Selection: Comparative Genomics of Two Sister Taxa of the Wild Yeast Saccharomyces paradoxus V Koufopanou, S Lomas, O Pronina, P Almeida, JP Sampaio, T Mousseau, ... Genome biology and evolution 12 (9), 1636-1645, 2020 | 7 | 2020 |