Thouis (Ray) Jones

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Anne E. CarpenterInstitute Scientist and Imaging Platform Director, Broad Institute of Harvard and MITVerified email at broadinstitute.org
Polina GollandMassachusetts Institute of TechnologyVerified email at mit.edu
Hanspeter PfisterAn Wang Professor of Computer Science, Harvard UniversityVerified email at seas.harvard.edu
Jeff Lichtmanprofessor of molecular and cellular biology, Harvard UniversityVerified email at mcb.harvard.edu
David M. SabatiniInstitute of Organic Chemistry and Biochemistry of the CASVerified email at uochb.cas.cz
Michael R. LamprechtHealth Tech Investor @ TenmileVerified email at columbia.edu
Ronald PerryMitsubishi Electric Research LaboratoriesVerified email at merl.com
Seymour Knowles-BarleyVolpara HealthVerified email at volparahealth.com
Jason MoffatSenior Scientist & Program Head, Genetics & Genome Biology, Sickkids Hospital; Professor, UofTVerified email at utoronto.ca
David GuertinUMass Medical SchoolVerified email at umassmed.edu
Narayanan 'Bobby' KasthuriUniversity of Chicago/Argonne National LaboratoryVerified email at uchicago.edu
William T. FreemanProfessor of Computer Science, MITVerified email at mit.edu
Sarah Frisken (aka Gibson)Research Associate, Brigham and Women's HospitalVerified email at bwh.harvard.edu
Sharon Grossman KennedyResident Physician at Massachusetts General HospitalVerified email at broadinstitute.org
Ola FrimanSICK LinköpingVerified email at sickivp.se
Vebjorn LjosaComputational biologist, Broad Institute of MIT and HarvardVerified email at broad.mit.edu
Drew T Bergman, MDMass General Brigham, Dartmouth Cancer CenterVerified email at mgb.org
Jesse Engreitz, PhDStanford University; Broad Institute of MIT and HarvardVerified email at stanford.edu
Charles FulcoSanofiVerified email at sanofi.com
Joseph NasserBrandeis UniversityVerified email at brandeis.edu

Thouis (Ray) Jones

Other namesThouis R. Jones, Ray Jones, Thouis Jones

Broad Institute

Verified email at broadinstitute.org - Homepage

Genomics Gene Regulation


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CellProfiler: image analysis software for identifying and quantifying cell phenotypes AE Carpenter, TR Jones, MR Lamprecht, C Clarke, IH Kang, O Friman, ... Genome biology 7, 1-11, 2006	5745	2006
Example-based super-resolution WT Freeman, TR Jones, EC Pasztor IEEE Computer graphics and Applications 22 (2), 56-65, 2002	3572	2002
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ... Bioinformatics 27 (8), 1179-1180, 2011	1139	2011
Saturated reconstruction of a volume of neocortex N Kasthuri, KJ Hayworth, DR Berger, RL Schalek, JA Conchello, ... Cell 162 (3), 648-661, 2015	1056	2015
Adaptively sampled distance fields: A general representation of shape for computer graphics SF Frisken, RN Perry, AP Rockwood, TR Jones Proceedings of the 27th annual conference on Computer graphics and …, 2000	906	2000
Non-iterative, feature-preserving mesh smoothing TR Jones, F Durand, M Desbrun ACM SIGGRAPH 2003 Papers, 943-949, 2003	785	2003
Activity-by-contact model of enhancer–promoter regulation from thousands of CRISPR perturbations CP Fulco, J Nasser, TR Jones, G Munson, DT Bergman, V Subramanian, ... Nature genetics 51 (12), 1664-1669, 2019	781	2019
CellProfiler Analyst: data exploration and analysis software for complex image-based screens TR Jones, IH Kang, DB Wheeler, RA Lindquist, A Papallo, DM Sabatini, ... BMC bioinformatics 9, 1-16, 2008	642	2008
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning TR Jones, AE Carpenter, MR Lamprecht, J Moffat, SJ Silver, JK Grenier, ... Proceedings of the National Academy of Sciences 106 (6), 1826-1831, 2009	454	2009
Genome-wide enhancer maps link risk variants to disease genes J Nasser, DT Bergman, CP Fulco, P Guckelberger, BR Doughty, ... Nature 593 (7858), 238-243, 2021	442	2021
Voronoi-based segmentation of cells on image manifolds TR Jones, A Carpenter, P Golland International Workshop on Computer Vision for Biomedical Image Applications …, 2005	228	2005
Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment V Ljosa, PD Caie, R Ter Horst, KL Sokolnicki, EL Jenkins, S Daya, ... Journal of biomolecular screening 18 (10), 1321-1329, 2013	191	2013
Large-scale automatic reconstruction of neuronal processes from electron microscopy images V Kaynig, A Vazquez-Reina, S Knowles-Barley, M Roberts, TR Jones, ... Medical image analysis 22 (1), 77-88, 2015	146	2015
Pipeline for illumination correction of images for high‐throughput microscopy S Singh, MA Bray, TR Jones, AE Carpenter Journal of microscopy 256 (3), 231-236, 2014	124	2014
Compatibility rules of human enhancer and promoter sequences DT Bergman, TR Jones, V Liu, J Ray, E Jagoda, L Siraj, HY Kang, ... Nature 607 (7917), 176-184, 2022	104	2022
A siRNA screen identifies RAD21 , EIF3H , CHRAC1 and TANC2 as driver genes within the 8q23, 8q24 … SF Mahmood, N Gruel, E Chapeaublanc, A Lescure, T Jones, F Reyal, ... Carcinogenesis 35 (3), 670-682, 2014	90	2014
Normal improvement for point rendering TR Jones, F Durand, M Zwicker IEEE Computer Graphics and Applications 24 (4), 53-56, 2004	90	2004
Efficient generation of Poisson-disk sampling patterns TR Jones Journal of Graphics Tools 11 (2), 27-36, 2006	88	2006
Small molecules discovered in a pathway screen target the Rho pathway in cytokinesis AB Castoreno, Y Smurnyy, AD Torres, MS Vokes, TR Jones, ... Nature chemical biology 6 (6), 457-463, 2010	72	2010
Detail-directed hierarchical distance fields SF Frisken, RN Perry, TR Jones US Patent 6,396,492, 2002	71	2002

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