Galaxy: a web‐based genome analysis tool for experimentalists D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ... Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010 | 1803 | 2010 |
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes SB Montgomery, DL Goode, E Kvikstad, CA Albers, ZD Zhang, XJ Mu, ... Genome research 23 (5), 749-761, 2013 | 281 | 2013 |
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications A Fungtammasan, G Ananda, SE Hile, MSW Su, C Sun, R Harris, ... Genome research 25 (5), 736-749, 2015 | 108 | 2015 |
Windshield splatter analysis with the Galaxy metagenomic pipeline SK Pond, S Wadhawan, F Chiaromonte, G Ananda, WY Chung, J Taylor, ... Genome research 19 (11), 2144-2153, 2009 | 104 | 2009 |
Distinct mutational behaviors differentiate short tandem repeats from microsatellites in the human genome G Ananda, E Walsh, KD Jacob, M Krasilnikova, KA Eckert, F Chiaromonte, ... Genome biology and evolution 5 (3), 606-620, 2013 | 83 | 2013 |
Ancestry-driven recalibration of tumor mutational burden and disparate clinical outcomes in response to immune checkpoint inhibitors AH Nassar, E Adib, S Abou Alaiwi, T El Zarif, S Groha, EW Akl, PV Nuzzo, ... Cancer Cell 40 (10), 1161-1172. e5, 2022 | 73 | 2022 |
Astrocyte support for oligodendrocyte differentiation can be conveyed via extracellular vesicles but diminishes with age CM Willis, AM Nicaise, ER Bongarzone, M Givogri, CR Reiter, O Heintz, ... Scientific reports 10 (1), 828, 2020 | 73 | 2020 |
HELLS and PRDM9 form a pioneer complex to open chromatin at meiotic recombination hot spots C Spruce, S Dlamini, G Ananda, N Bronkema, H Tian, K Paigen, ... Genes & development 34 (5-6), 398-412, 2020 | 67 | 2020 |
The genome of C57BL/6J “Eve”, the mother of the laboratory mouse genome reference strain VK Sarsani, N Raghupathy, IT Fiddes, J Armstrong, F Thibaud-Nissen, ... G3: Genes, Genomes, Genetics 9 (6), 1795-1805, 2019 | 65 | 2019 |
Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders H Fairfield, A Srivastava, G Ananda, R Liu, M Kircher, A Lakshminarayana, ... Genome research 25 (7), 948-957, 2015 | 63 | 2015 |
& Taylor, J.(2010). Galaxy: a web‐based genome analysis tool for experimentalists D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan Current protocols in molecular biology, 19-10, 22 | 63 | 22 |
A genome-wide view of mutation rate co-variation using multivariate analyses G Ananda, F Chiaromonte, KD Makova Genome biology 12, 1-18, 2011 | 43 | 2011 |
Molecular genetic analysis of ovarian Brenner tumors and associated mucinous epithelial neoplasms: high variant concordance and identification of mutually exclusive RAS driver … LJ Tafe, KE Muller, G Ananda, T Mitchell, V Spotlow, SE Patterson, ... The American Journal of Pathology 186 (3), 671-677, 2016 | 42 | 2016 |
Transcriptomic stratification of late-onset Alzheimer's cases reveals novel genetic modifiers of disease pathology N Milind, C Preuss, A Haber, G Ananda, S Mukherjee, C John, S Shapley, ... PLoS genetics 16 (6), e1008775, 2020 | 37 | 2020 |
Genomic data analysis workflows for tumors from patient-derived xenografts (PDXs): challenges and guidelines XY Woo, A Srivastava, JH Graber, V Yadav, VK Sarsani, A Simons, ... BMC medical genomics 12, 1-19, 2019 | 37 | 2019 |
Microsatellite interruptions stabilize primate genomes and exist as population-specific single nucleotide polymorphisms within individual human genomes G Ananda, SE Hile, A Breski, Y Wang, Y Kelkar, KD Makova, KA Eckert PLoS genetics 10 (7), e1004498, 2014 | 36 | 2014 |
Discovery of a new predominant cytosine DNA modification that is linked to gene expression in malaria parasites E Hammam, G Ananda, A Sinha, C Scheidig-Benatar, M Bohec, ... Nucleic acids research 48 (1), 184-199, 2020 | 35 | 2020 |
Development and validation of the JAX Cancer Treatment Profile™ for detection of clinically actionable mutations in solid tumors G Ananda, S Mockus, M Lundquist, V Spotlow, A Simons, T Mitchell, ... Experimental and molecular pathology 98 (1), 106-112, 2015 | 34 | 2015 |
Segmenting the human genome based on states of neutral genetic divergence P Kuruppumullage Don, G Ananda, F Chiaromonte, KD Makova Proceedings of the National Academy of Sciences 110 (36), 14699-14704, 2013 | 34 | 2013 |
Somatic gene mutation analysis of triple negative breast cancers JL Dillon, SM Mockus, G Ananda, V Spotlow, WA Wells, GJ Tsongalis, ... The Breast 29, 202-207, 2016 | 31 | 2016 |