Gabriel Pratt
Gabriel Pratt
Bioinformatics Scientist, TwinStrand Biosciences
Verified email at
Cited by
Cited by
Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)
EL Van Nostrand, GA Pratt, AA Shishkin, C Gelboin-Burkhart, MY Fang, ...
Nature methods 13 (6), 508-514, 2016
A large-scale binding and functional map of human RNA-binding proteins
EL Van Nostrand, P Freese, GA Pratt, X Wang, X Wei, R Xiao, SM Blue, ...
Nature 583 (7818), 711-719, 2020
Sequence, structure, and context preferences of human RNA binding proteins
D Dominguez, P Freese, MS Alexis, A Su, M Hochman, T Palden, ...
Molecular cell 70 (5), 854-867. e9, 2018
The clothes make the mRNA: past and present trends in mRNP fashion
G Singh, G Pratt, GW Yeo, MJ Moore
Annual review of biochemistry 84, 325-354, 2015
Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
MT Lovci, D Ghanem, H Marr, J Arnold, S Gee, M Parra, TY Liang, ...
Nature structural & molecular biology 20 (12), 1434-1442, 2013
A temporal chromatin signature in human embryonic stem cells identifies regulators of cardiac development
SL Paige, S Thomas, CL Stoick-Cooper, H Wang, L Maves, R Sandstrom, ...
Cell 151 (1), 221-232, 2012
The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression
T Hung, GA Pratt, B Sundararaman, MJ Townsend, C Chaivorapol, ...
Science 350 (6259), 455-459, 2015
Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses
K Kapeli, GA Pratt, AQ Vu, KR Hutt, FJ Martinez, B Sundararaman, ...
Nature communications 7 (1), 12143, 2016
Widespread RNA editing dysregulation in brains from autistic individuals
SS Tran, HI Jun, JH Bahn, A Azghadi, G Ramaswami, EL Van Nostrand, ...
Nature neuroscience 22 (1), 25-36, 2019
SONAR discovers RNA-binding proteins from analysis of large-scale protein-protein interactomes
KW Brannan, W Jin, SC Huelga, CAS Banks, JM Gilmore, L Florens, ...
Molecular cell 64 (2), 282-293, 2016
Protein-RNA networks regulated by normal and ALS-associated mutant HNRNPA2B1 in the nervous system
FJ Martinez, GA Pratt, EL Van Nostrand, R Batra, SC Huelga, K Kapeli, ...
Neuron 92 (4), 780-795, 2016
Enhanced CLIP uncovers IMP protein-RNA targets in human pluripotent stem cells important for cell adhesion and survival
AE Conway, EL Van Nostrand, GA Pratt, S Aigner, ML Wilbert, ...
Cell reports 15 (3), 666-679, 2016
Resources for the comprehensive discovery of functional RNA elements
B Sundararaman, L Zhan, SM Blue, R Stanton, K Elkins, S Olson, X Wei, ...
Molecular cell 61 (6), 903-913, 2016
Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins
EL Van Nostrand, GA Pratt, BA Yee, EC Wheeler, SM Blue, J Mueller, ...
Genome biology 21 (1), 1-26, 2020
Musashi-2 attenuates AHR signalling to expand human haematopoietic stem cells
S Rentas, NT Holzapfel, MS Belew, GA Pratt, V Voisin, BT Wilhelm, ...
Nature 532 (7600), 508-511, 2016
Target discrimination in nonsense-mediated mRNA decay requires Upf1 ATPase activity
SR Lee, GA Pratt, FJ Martinez, GW Yeo, J Lykke-Andersen
Molecular cell 59 (3), 413-425, 2015
Regulation of RNA editing by RNA-binding proteins in human cells
G Quinones-Valdez, SS Tran, HI Jun, JH Bahn, EW Yang, L Zhan, ...
Communications biology 2 (1), 19, 2019
Robust, cost-effective profiling of RNA binding protein targets with single-end enhanced crosslinking and immunoprecipitation (seCLIP)
EL Van Nostrand, TB Nguyen, C Gelboin-Burkhart, R Wang, SM Blue, ...
mRNA Processing: Methods and Protocols, 177-200, 2017
RBP-Maps enables robust generation of splicing regulatory maps
BA Yee, GA Pratt, BR Graveley, EL Van Nostrand, GW Yeo
Rna 25 (2), 193-204, 2019
Large-scale tethered function assays identify factors that regulate mRNA stability and translation
EC Luo, JL Nathanson, FE Tan, JL Schwartz, JC Schmok, A Shankar, ...
Nature structural & molecular biology 27 (10), 989-1000, 2020
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